Beshnova D - Search Results

1

Computational approach for binding prediction of SARS-CoV-2 with neutralizing antibodies.

Beshnova D, Fang Y, Du M, Sun Y, Du F, Ye J, Chen ZJ, Li B. Beshnova D, et al. Comput Struct Biotechnol J. 2022;20:2212-2222. doi: 10.1016/j.csbj.2022.04.038. Epub 2022 May 2. Comput Struct Biotechnol J. 2022. PMID: 35530743 Free PMC article.

2

De novo prediction of cancer-associated T cell receptors for noninvasive cancer detection.

Beshnova D, Ye J, Onabolu O, Moon B, Zheng W, Fu YX, Brugarolas J, Lea J, Li B. Beshnova D, et al. Sci Transl Med. 2020 Aug 19;12(557):eaaz3738. doi: 10.1126/scitranslmed.aaz3738. Sci Transl Med. 2020. PMID: 32817363 Free PMC article.

3

[Scaffold hopping computational approach for searching novel β-lactamase inhibitors].

Beshnova DA, Carolan C, Grigorenko VG, Rubtsova MY, Gbekor E, Lewis J, Lamzin VS, Egorov AM. Beshnova DA, et al. Biomed Khim. 2019 Oct;65(6):468-476. doi: 10.18097/PBMC20196506468. Biomed Khim. 2019. PMID: 31876517 Russian.

4

Synthesis, SAR and molecular docking study of novel non-β-lactam inhibitors of TEM type β-lactamase.

Antipin RL, Beshnova DA, Petrov RA, Shiryaeva AS, Andreeva IP, Grigorenko VG, Rubtsova MY, Majouga AG, Lamzin VS, Egorov AM. Antipin RL, et al. Among authors: beshnova da. Bioorg Med Chem Lett. 2017 Apr 1;27(7):1588-1592. doi: 10.1016/j.bmcl.2017.02.025. Epub 2017 Feb 16. Bioorg Med Chem Lett. 2017. PMID: 28237762 Free article.

5

Novel non-β-lactam inhibitor of β-lactamase TEM-171 based on acylated phenoxyaniline.

Grigorenko VG, Andreeva IP, Rubtsova MY, Deygen IM, Antipin RL, Majouga AG, Egorov AM, Beshnova DA, Kallio J, Hackenberg C, Lamzin VS. Grigorenko VG, et al. Among authors: beshnova da. Biochimie. 2017 Jan;132:45-53. doi: 10.1016/j.biochi.2016.10.011. Epub 2016 Oct 19. Biochimie. 2017. PMID: 27771370 Free article.

6

Estimation of the protein-ligand interaction energy for model building and validation.

Beshnova DA, Pereira J, Lamzin VS. Beshnova DA, et al. Acta Crystallogr D Struct Biol. 2017 Mar 1;73(Pt 3):195-202. doi: 10.1107/S2059798317003400. Epub 2017 Mar 6. Acta Crystallogr D Struct Biol. 2017. PMID: 28291754 Free PMC article.

7

Regulation of the nucleosome repeat length in vivo by the DNA sequence, protein concentrations and long-range interactions.

Beshnova DA, Cherstvy AG, Vainshtein Y, Teif VB. Beshnova DA, et al. PLoS Comput Biol. 2014 Jul 3;10(7):e1003698. doi: 10.1371/journal.pcbi.1003698. eCollection 2014 Jul. PLoS Comput Biol. 2014. PMID: 24992723 Free PMC article.

8

Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development.

Teif VB, Beshnova DA, Vainshtein Y, Marth C, Mallm JP, Höfer T, Rippe K. Teif VB, et al. Among authors: beshnova da. Genome Res. 2014 Aug;24(8):1285-95. doi: 10.1101/gr.164418.113. Epub 2014 May 8. Genome Res. 2014. PMID: 24812327 Free PMC article.

9

Taking into account nucleosomes for predicting gene expression.

Teif VB, Erdel F, Beshnova DA, Vainshtein Y, Mallm JP, Rippe K. Teif VB, et al. Among authors: beshnova da. Methods. 2013 Jul 15;62(1):26-38. doi: 10.1016/j.ymeth.2013.03.011. Epub 2013 Mar 21. Methods. 2013. PMID: 23523656 Review.

10

A novel computational approach "BP-STOCH" to study ligand binding to finite lattice.

Beshnova DA, Bereznyak EG, Shestopalova AV, Evstigneev MP. Beshnova DA, et al. Biopolymers. 2011 Mar;95(3):208-16. doi: 10.1002/bip.21562. Biopolymers. 2011. PMID: 21072855

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