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A comprehensive approach for genome-wide efficiency profiling of DNA modifying enzymes.
Kyriakopoulos C, Nordström K, Kramer PL, Gottfreund JY, Salhab A, Arand J, Müller F, von Meyenn F, Ficz G, Reik W, Wolf V, Walter J, Giehr P. Kyriakopoulos C, et al. Among authors: nordstrom k. Cell Rep Methods. 2022 Mar 28;2(3):100187. doi: 10.1016/j.crmeth.2022.100187. eCollection 2022 Mar 28. Cell Rep Methods. 2022. PMID: 35475220 Free PMC article.
Epigenetic dynamics of monocyte-to-macrophage differentiation.
Wallner S, Schröder C, Leitão E, Berulava T, Haak C, Beißer D, Rahmann S, Richter AS, Manke T, Bönisch U, Arrigoni L, Fröhler S, Klironomos F, Chen W, Rajewsky N, Müller F, Ebert P, Lengauer T, Barann M, Rosenstiel P, Gasparoni G, Nordström K, Walter J, Brors B, Zipprich G, Felder B, Klein-Hitpass L, Attenberger C, Schmitz G, Horsthemke B. Wallner S, et al. Among authors: nordstrom k. Epigenetics Chromatin. 2016 Jul 29;9:33. doi: 10.1186/s13072-016-0079-z. eCollection 2016. Epigenetics Chromatin. 2016. PMID: 27478504 Free PMC article.
Epigenomic Profiling of Human CD4+ T Cells Supports a Linear Differentiation Model and Highlights Molecular Regulators of Memory Development.
Durek P, Nordström K, Gasparoni G, Salhab A, Kressler C, de Almeida M, Bassler K, Ulas T, Schmidt F, Xiong J, Glažar P, Klironomos F, Sinha A, Kinkley S, Yang X, Arrigoni L, Amirabad AD, Ardakani FB, Feuerbach L, Gorka O, Ebert P, Müller F, Li N, Frischbutter S, Schlickeiser S, Cendon C, Fröhler S, Felder B, Gasparoni N, Imbusch CD, Hutter B, Zipprich G, Tauchmann Y, Reinke S, Wassilew G, Hoffmann U, Richter AS, Sieverling L; DEEP Consortium; Chang HD, Syrbe U, Kalus U, Eils J, Brors B, Manke T, Ruland J, Lengauer T, Rajewsky N, Chen W, Dong J, Sawitzki B, Chung HR, Rosenstiel P, Schulz MH, Schultze JL, Radbruch A, Walter J, Hamann A, Polansky JK. Durek P, et al. Among authors: nordstrom k. Immunity. 2016 Nov 15;45(5):1148-1161. doi: 10.1016/j.immuni.2016.10.022. Immunity. 2016. PMID: 27851915 Free article.
A comprehensive analysis of 195 DNA methylomes reveals shared and cell-specific features of partially methylated domains.
Salhab A, Nordström K, Gasparoni G, Kattler K, Ebert P, Ramirez F, Arrigoni L, Müller F, Polansky JK, Cadenas C, G Hengstler J, Lengauer T, Manke T; DEEP Consortium; Walter J. Salhab A, et al. Among authors: nordstrom k. Genome Biol. 2018 Sep 28;19(1):150. doi: 10.1186/s13059-018-1510-5. Genome Biol. 2018. PMID: 30266094 Free PMC article.
Unique and assay specific features of NOMe-, ATAC- and DNase I-seq data.
Nordström KJV, Schmidt F, Gasparoni N, Salhab A, Gasparoni G, Kattler K, Müller F, Ebert P, Costa IG; DEEP consortium; Pfeifer N, Lengauer T, Schulz MH, Walter J. Nordström KJV, et al. Nucleic Acids Res. 2019 Nov 18;47(20):10580-10596. doi: 10.1093/nar/gkz799. Nucleic Acids Res. 2019. PMID: 31584093 Free PMC article.
Targeted De-Methylation of the FOXP3-TSDR Is Sufficient to Induce Physiological FOXP3 Expression but Not a Functional Treg Phenotype.
Kressler C, Gasparoni G, Nordström K, Hamo D, Salhab A, Dimitropoulos C, Tierling S, Reinke P, Volk HD, Walter J, Hamann A, Polansky JK. Kressler C, et al. Among authors: nordstrom k. Front Immunol. 2021 Jan 7;11:609891. doi: 10.3389/fimmu.2020.609891. eCollection 2020. Front Immunol. 2021. PMID: 33488615 Free PMC article.
387 results