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Serial crystallography captures dynamic control of sequential electron and proton transfer events in a flavoenzyme.
Maestre-Reyna M, Yang CH, Nango E, Huang WC, Ngurah Putu EPG, Wu WJ, Wang PH, Franz-Badur S, Saft M, Emmerich HJ, Wu HY, Lee CC, Huang KF, Chang YK, Liao JH, Weng JH, Gad W, Chang CW, Pang AH, Sugahara M, Owada S, Hosokawa Y, Joti Y, Yamashita A, Tanaka R, Tanaka T, Luo F, Tono K, Hsu KC, Kiontke S, Schapiro I, Spadaccini R, Royant A, Yamamoto J, Iwata S, Essen LO, Bessho Y, Tsai MD. Maestre-Reyna M, et al. Among authors: joti y. Nat Chem. 2022 Jun;14(6):677-685. doi: 10.1038/s41557-022-00922-3. Epub 2022 Apr 7. Nat Chem. 2022. PMID: 35393554
Imaging live cell in micro-liquid enclosure by X-ray laser diffraction.
Kimura T, Joti Y, Shibuya A, Song C, Kim S, Tono K, Yabashi M, Tamakoshi M, Moriya T, Oshima T, Ishikawa T, Bessho Y, Nishino Y. Kimura T, et al. Among authors: joti y. Nat Commun. 2014;5:3052. doi: 10.1038/ncomms4052. Nat Commun. 2014. PMID: 24394916 Free PMC article.
Macromolecular structures probed by combining single-shot free-electron laser diffraction with synchrotron coherent X-ray imaging.
Gallagher-Jones M, Bessho Y, Kim S, Park J, Kim S, Nam D, Kim C, Kim Y, Noh do Y, Miyashita O, Tama F, Joti Y, Kameshima T, Hatsui T, Tono K, Kohmura Y, Yabashi M, Hasnain SS, Ishikawa T, Song C. Gallagher-Jones M, et al. Among authors: joti y. Nat Commun. 2014 May 2;5:3798. doi: 10.1038/ncomms4798. Nat Commun. 2014. PMID: 24786694 Free article.
In vivo crystallography at X-ray free-electron lasers: the next generation of structural biology?
Gallat FX, Matsugaki N, Coussens NP, Yagi KJ, Boudes M, Higashi T, Tsuji D, Tatano Y, Suzuki M, Mizohata E, Tono K, Joti Y, Kameshima T, Park J, Song C, Hatsui T, Yabashi M, Nango E, Itoh K, Coulibaly F, Tobe S, Ramaswamy S, Stay B, Iwata S, Chavas LM. Gallat FX, et al. Among authors: joti y. Philos Trans R Soc Lond B Biol Sci. 2014 Jul 17;369(1647):20130497. doi: 10.1098/rstb.2013.0497. Philos Trans R Soc Lond B Biol Sci. 2014. PMID: 24914164 Free PMC article.
Grease matrix as a versatile carrier of proteins for serial crystallography.
Sugahara M, Mizohata E, Nango E, Suzuki M, Tanaka T, Masuda T, Tanaka R, Shimamura T, Tanaka Y, Suno C, Ihara K, Pan D, Kakinouchi K, Sugiyama S, Murata M, Inoue T, Tono K, Song C, Park J, Kameshima T, Hatsui T, Joti Y, Yabashi M, Iwata S. Sugahara M, et al. Among authors: joti y. Nat Methods. 2015 Jan;12(1):61-3. doi: 10.1038/nmeth.3172. Epub 2014 Nov 10. Nat Methods. 2015. PMID: 25384243 Free article.
Diverse application platform for hard X-ray diffraction in SACLA (DAPHNIS): application to serial protein crystallography using an X-ray free-electron laser.
Tono K, Nango E, Sugahara M, Song C, Park J, Tanaka T, Tanaka R, Joti Y, Kameshima T, Ono S, Hatsui T, Mizohata E, Suzuki M, Shimamura T, Tanaka Y, Iwata S, Yabashi M. Tono K, et al. Among authors: joti y. J Synchrotron Radiat. 2015 May;22(3):532-7. doi: 10.1107/S1600577515004464. Epub 2015 Apr 16. J Synchrotron Radiat. 2015. PMID: 25931065 Free PMC article.
An isomorphous replacement method for efficient de novo phasing for serial femtosecond crystallography.
Yamashita K, Pan D, Okuda T, Sugahara M, Kodan A, Yamaguchi T, Murai T, Gomi K, Kajiyama N, Mizohata E, Suzuki M, Nango E, Tono K, Joti Y, Kameshima T, Park J, Song C, Hatsui T, Yabashi M, Iwata S, Kato H, Ago H, Yamamoto M, Nakatsu T. Yamashita K, et al. Among authors: joti y. Sci Rep. 2015 Sep 11;5:14017. doi: 10.1038/srep14017. Sci Rep. 2015. PMID: 26360462 Free PMC article.
Native sulfur/chlorine SAD phasing for serial femtosecond crystallography.
Nakane T, Song C, Suzuki M, Nango E, Kobayashi J, Masuda T, Inoue S, Mizohata E, Nakatsu T, Tanaka T, Tanaka R, Shimamura T, Tono K, Joti Y, Kameshima T, Hatsui T, Yabashi M, Nureki O, Iwata S, Sugahara M. Nakane T, et al. Among authors: joti y. Acta Crystallogr D Biol Crystallogr. 2015 Dec 1;71(Pt 12):2519-25. doi: 10.1107/S139900471501857X. Epub 2015 Nov 27. Acta Crystallogr D Biol Crystallogr. 2015. PMID: 26627659 Free PMC article.
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