Hughes CJ - Search Results

1

A comprehensive LFQ benchmark dataset on modern day acquisition strategies in proteomics.

Van Puyvelde B, Daled S, Willems S, Gabriels R, Gonzalez de Peredo A, Chaoui K, Mouton-Barbosa E, Bouyssié D, Boonen K, Hughes CJ, Gethings LA, Perez-Riverol Y, Bloomfield N, Tate S, Schiltz O, Martens L, Deforce D, Dhaenens M. Van Puyvelde B, et al. Among authors: hughes cj. Sci Data. 2022 Mar 30;9(1):126. doi: 10.1038/s41597-022-01216-6. Sci Data. 2022. PMID: 35354825 Free PMC article.

2

Access to the Phospho-proteome via the Mitigation of Peptide-Metal Interactions.

Hughes CJ, Gethings LA, Wilson ID, Plumb RS. Hughes CJ, et al. J Chromatogr A. 2022 Jun 21;1673:463024. doi: 10.1016/j.chroma.2022.463024. Epub 2022 Apr 4. J Chromatogr A. 2022. PMID: 35490462

3

High-Throughput Microbore Ultrahigh-Performance Liquid Chromatography-Ion Mobility-Enabled-Mass Spectrometry-Based Proteomics Methodology for the Exploratory Analysis of Serum Samples from Large Cohort Studies.

Lennon S, Hughes CJ, Muazzam A, Townsend PA, Gethings LA, Wilson ID, Plumb RS. Lennon S, et al. Among authors: hughes cj. J Proteome Res. 2021 Mar 5;20(3):1705-1715. doi: 10.1021/acs.jproteome.0c00821. Epub 2021 Feb 10. J Proteome Res. 2021. PMID: 33566619

4

Additional precursor purification in isobaric mass tagging experiments by traveling wave ion mobility separation (TWIMS).

Shliaha PV, Jukes-Jones R, Christoforou A, Fox J, Hughes C, Langridge J, Cain K, Lilley KS. Shliaha PV, et al. J Proteome Res. 2014 Jul 3;13(7):3360-9. doi: 10.1021/pr500220g. Epub 2014 Jun 16. J Proteome Res. 2014. PMID: 24854137

5

Evaluation of acquisition modes for semi-quantitative analysis by targeted and untargeted mass spectrometry.

Britt HM, Cragnolini T, Khatun S, Hatimy A, James J, Page N, Williams JP, Hughes C, Denny R, Thalassinos K, Vissers JPC. Britt HM, et al. Rapid Commun Mass Spectrom. 2022 Jul 15;36(13):e9308. doi: 10.1002/rcm.9308. Rapid Commun Mass Spectrom. 2022. PMID: 35353398 Free PMC article.

6

Scanning Quadrupole Data-Independent Acquisition, Part A: Qualitative and Quantitative Characterization.

Moseley MA, Hughes CJ, Juvvadi PR, Soderblom EJ, Lennon S, Perkins SR, Thompson JW, Steinbach WJ, Geromanos SJ, Wildgoose J, Langridge JI, Richardson K, Vissers JPC. Moseley MA, et al. Among authors: hughes cj. J Proteome Res. 2018 Feb 2;17(2):770-779. doi: 10.1021/acs.jproteome.7b00464. Epub 2017 Dec 29. J Proteome Res. 2018. PMID: 28901143

7

A probabilistic framework for peptide and protein quantification from data-dependent and data-independent LC-MS proteomics experiments.

Richardson K, Denny R, Hughes C, Skilling J, Sikora J, Dadlez M, Manteca A, Jung HR, Jensen ON, Redeker V, Melki R, Langridge JI, Vissers JP. Richardson K, et al. OMICS. 2012 Sep;16(9):468-82. doi: 10.1089/omi.2012.0019. Epub 2012 Aug 7. OMICS. 2012. PMID: 22871168 Free PMC article.

8

Simulating and validating proteomics data and search results.

Geromanos SJ, Hughes C, Golick D, Ciavarini S, Gorenstein MV, Richardson K, Hoyes JB, Vissers JP, Langridge JI. Geromanos SJ, et al. Proteomics. 2011 Mar;11(6):1189-211. doi: 10.1002/pmic.201000576. Epub 2011 Feb 7. Proteomics. 2011. PMID: 21298790

9

Developments in quantitative mass spectrometry for the analysis of proteome dynamics.

Hughes C, Krijgsveld J. Hughes C, et al. Trends Biotechnol. 2012 Dec;30(12):668-76. doi: 10.1016/j.tibtech.2012.09.007. Epub 2012 Oct 27. Trends Biotechnol. 2012. PMID: 23107010 Review.

10

Advances in quadrupole and time-of-flight mass spectrometry for peptide MRM based translational research analysis.

Mbasu RJ, Heaney LM, Molloy BJ, Hughes CJ, Ng LL, Vissers JP, Langridge JI, Jones DJ. Mbasu RJ, et al. Among authors: hughes cj. Proteomics. 2016 Aug;16(15-16):2206-20. doi: 10.1002/pmic.201500500. Epub 2016 Jul 28. Proteomics. 2016. PMID: 27214876

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