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A comprehensive LFQ benchmark dataset on modern day acquisition strategies in proteomics.
Van Puyvelde B, Daled S, Willems S, Gabriels R, Gonzalez de Peredo A, Chaoui K, Mouton-Barbosa E, Bouyssié D, Boonen K, Hughes CJ, Gethings LA, Perez-Riverol Y, Bloomfield N, Tate S, Schiltz O, Martens L, Deforce D, Dhaenens M. Van Puyvelde B, et al. Among authors: gabriels r. Sci Data. 2022 Mar 30;9(1):126. doi: 10.1038/s41597-022-01216-6. Sci Data. 2022. PMID: 35354825 Free PMC article.
Removing the Hidden Data Dependency of DIA with Predicted Spectral Libraries.
Van Puyvelde B, Willems S, Gabriels R, Daled S, De Clerck L, Vande Casteele S, Staes A, Impens F, Deforce D, Martens L, Degroeve S, Dhaenens M. Van Puyvelde B, et al. Among authors: gabriels r. Proteomics. 2020 Feb;20(3-4):e1900306. doi: 10.1002/pmic.201900306. Epub 2020 Feb 5. Proteomics. 2020. PMID: 31981311
COSS: A Fast and User-Friendly Tool for Spectral Library Searching.
Shiferaw GA, Vandermarliere E, Hulstaert N, Gabriels R, Martens L, Volders PJ. Shiferaw GA, et al. Among authors: gabriels r. J Proteome Res. 2020 Jul 2;19(7):2786-2793. doi: 10.1021/acs.jproteome.9b00743. Epub 2020 May 28. J Proteome Res. 2020. PMID: 32384242
Universal Spectrum Identifier for mass spectra.
Deutsch EW, Perez-Riverol Y, Carver J, Kawano S, Mendoza L, Van Den Bossche T, Gabriels R, Binz PA, Pullman B, Sun Z, Shofstahl J, Bittremieux W, Mak TD, Klein J, Zhu Y, Lam H, Vizcaíno JA, Bandeira N. Deutsch EW, et al. Among authors: gabriels r. Nat Methods. 2021 Jul;18(7):768-770. doi: 10.1038/s41592-021-01184-6. Epub 2021 Jun 28. Nat Methods. 2021. PMID: 34183830 Free PMC article.
Cov-MS: A Community-Based Template Assay for Mass-Spectrometry-Based Protein Detection in SARS-CoV-2 Patients.
Van Puyvelde B, Van Uytfanghe K, Tytgat O, Van Oudenhove L, Gabriels R, Bouwmeester R, Daled S, Van Den Bossche T, Ramasamy P, Verhelst S, De Clerck L, Corveleyn L, Willems S, Debunne N, Wynendaele E, De Spiegeleer B, Judak P, Roels K, De Wilde L, Van Eenoo P, Reyns T, Cherlet M, Dumont E, Debyser G, t'Kindt R, Sandra K, Gupta S, Drouin N, Harms A, Hankemeier T, Jones DJL, Gupta P, Lane D, Lane CS, El Ouadi S, Vincendet JB, Morrice N, Oehrle S, Tanna N, Silvester S, Hannam S, Sigloch FC, Bhangu-Uhlmann A, Claereboudt J, Anderson NL, Razavi M, Degroeve S, Cuypers L, Stove C, Lagrou K, Martens GA, Deforce D, Martens L, Vissers JPC, Dhaenens M. Van Puyvelde B, et al. Among authors: gabriels r. JACS Au. 2021 Jun 28;1(6):750-765. doi: 10.1021/jacsau.1c00048. Epub 2021 May 3. JACS Au. 2021. PMID: 34254058 Free PMC article.
Ion Mobility Coupled to a Time-of-Flight Mass Analyzer Combined With Fragment Intensity Predictions Improves Identification of Classical Bioactive Peptides and Small Open Reading Frame-Encoded Peptides.
Peeters MKR, Baggerman G, Gabriels R, Pepermans E, Menschaert G, Boonen K. Peeters MKR, et al. Among authors: gabriels r. Front Cell Dev Biol. 2021 Sep 17;9:720570. doi: 10.3389/fcell.2021.720570. eCollection 2021. Front Cell Dev Biol. 2021. PMID: 34604223 Free PMC article.
73 results