Chu C - Search Results

1

Reverse Transcriptase Inhibition Disrupts Repeat Element Life Cycle in Colorectal Cancer.

Rajurkar M, Parikh AR, Solovyov A, You E, Kulkarni AS, Chu C, Xu KH, Jaicks C, Taylor MS, Wu C, Alexander KA, Good CR, Szabolcs A, Gerstberger S, Tran AV, Xu N, Ebright RY, Van Seventer EE, Vo KD, Tai EC, Lu C, Joseph-Chazan J, Raabe MJ, Nieman LT, Desai N, Arora KS, Ligorio M, Thapar V, Cohen L, Garden PM, Senussi Y, Zheng H, Allen JN, Blaszkowsky LS, Clark JW, Goyal L, Wo JY, Ryan DP, Corcoran RB, Deshpande V, Rivera MN, Aryee MJ, Hong TS, Berger SL, Walt DR, Burns KH, Park PJ, Greenbaum BD, Ting DT. Rajurkar M, et al. Among authors: chu c. Cancer Discov. 2022 Jun 2;12(6):1462-1481. doi: 10.1158/2159-8290.CD-21-1117. Cancer Discov. 2022. PMID: 35320348 Free PMC article.

2

HiNT: a computational method for detecting copy number variations and translocations from Hi-C data.

Wang S, Lee S, Chu C, Jain D, Kerpedjiev P, Nelson GM, Walsh JM, Alver BH, Park PJ. Wang S, et al. Among authors: chu c. Genome Biol. 2020 Mar 23;21(1):73. doi: 10.1186/s13059-020-01986-5. Genome Biol. 2020. PMID: 32293513 Free PMC article.

3

Identification and Genotyping of Transposable Element Insertions From Genome Sequencing Data.

Chu C, Zhao B, Park PJ, Lee EA. Chu C, et al. Curr Protoc Hum Genet. 2020 Sep;107(1):e102. doi: 10.1002/cphg.102. Curr Protoc Hum Genet. 2020. PMID: 32662945 Free PMC article. Review.

4

HiTea: a computational pipeline to identify non-reference transposable element insertions in Hi-C data.

Jain D, Chu C, Alver BH, Lee S, Lee EA, Park PJ. Jain D, et al. Among authors: chu c. Bioinformatics. 2021 May 23;37(8):1045-1051. doi: 10.1093/bioinformatics/btaa923. Bioinformatics. 2021. PMID: 33136153 Free PMC article.

5

BamSnap: a lightweight viewer for sequencing reads in BAM files.

Kwon M, Lee S, Berselli M, Chu C, Park PJ. Kwon M, et al. Among authors: chu c. Bioinformatics. 2021 Apr 19;37(2):263-264. doi: 10.1093/bioinformatics/btaa1101. Bioinformatics. 2021. PMID: 33416869 Free PMC article.

6

Comprehensive identification of transposable element insertions using multiple sequencing technologies.

Chu C, Borges-Monroy R, Viswanadham VV, Lee S, Li H, Lee EA, Park PJ. Chu C, et al. Nat Commun. 2021 Jun 22;12(1):3836. doi: 10.1038/s41467-021-24041-8. Nat Commun. 2021. PMID: 34158502 Free PMC article.

7

The landscape of human SVA retrotransposons.

Chu C, Lin EW, Tran A, Jin H, Ho NI, Veit A, Cortes-Ciriano I, Burns KH, Ting DT, Park PJ. Chu C, et al. Nucleic Acids Res. 2023 Nov 27;51(21):11453-11465. doi: 10.1093/nar/gkad821. Nucleic Acids Res. 2023. PMID: 37823611 Free PMC article.

8

Contribution of de novo retroelements to birth defects and childhood cancers.

Chu C, Ljungström V, Tran A, Jin H, Park PJ. Chu C, et al. medRxiv [Preprint]. 2024 Apr 16:2024.04.15.24305733. doi: 10.1101/2024.04.15.24305733. medRxiv. 2024. PMID: 38699361 Free PMC article. Preprint.

9

Whole-genome analysis reveals the contribution of non-coding de novo transposon insertions to autism spectrum disorder.

Borges-Monroy R, Chu C, Dias C, Choi J, Lee S, Gao Y, Shin T, Park PJ, Walsh CA, Lee EA. Borges-Monroy R, et al. Among authors: chu c. Mob DNA. 2021 Nov 27;12(1):28. doi: 10.1186/s13100-021-00256-w. Mob DNA. 2021. PMID: 34838103 Free PMC article.

10

ERα-associated translocations underlie oncogene amplifications in breast cancer.

Lee JJ, Jung YL, Cheong TC, Espejo Valle-Inclan J, Chu C, Gulhan DC, Ljungström V, Jin H, Viswanadham VV, Watson EV, Cortés-Ciriano I, Elledge SJ, Chiarle R, Pellman D, Park PJ. Lee JJ, et al. Among authors: chu c. Nature. 2023 Jun;618(7967):1024-1032. doi: 10.1038/s41586-023-06057-w. Epub 2023 May 17. Nature. 2023. PMID: 37198482 Free PMC article.

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