Sieg J - Search Results

1

Analyzing structural features of proteins from deep-sea organisms.

Sieg J, Sandmeier CC, Lieske J, Meents A, Lemmen C, Streit WR, Rarey M. Sieg J, et al. Proteins. 2022 Aug;90(8):1521-1537. doi: 10.1002/prot.26337. Epub 2022 Apr 5. Proteins. 2022. PMID: 35313380

2

StructureProfiler: an all-in-one tool for 3D protein structure profiling.

Meyder A, Kampen S, Sieg J, Fährrolfes R, Friedrich NO, Flachsenberg F, Rarey M. Meyder A, et al. Among authors: sieg j. Bioinformatics. 2019 Mar 1;35(5):874-876. doi: 10.1093/bioinformatics/bty692. Bioinformatics. 2019. PMID: 30124779

3

In Need of Bias Control: Evaluating Chemical Data for Machine Learning in Structure-Based Virtual Screening.

Sieg J, Flachsenberg F, Rarey M. Sieg J, et al. J Chem Inf Model. 2019 Mar 25;59(3):947-961. doi: 10.1021/acs.jcim.8b00712. Epub 2019 Mar 5. J Chem Inf Model. 2019. PMID: 30835112

4

ProteinsPlus: a comprehensive collection of web-based molecular modeling tools.

Schöning-Stierand K, Diedrich K, Ehrt C, Flachsenberg F, Graef J, Sieg J, Penner P, Poppinga M, Ungethüm A, Rarey M. Schöning-Stierand K, et al. Among authors: sieg j. Nucleic Acids Res. 2022 Jul 5;50(W1):W611-W615. doi: 10.1093/nar/gkac305. Nucleic Acids Res. 2022. PMID: 35489057 Free PMC article.

5

Modeling with Alternate Locations in X-ray Protein Structures.

Gutermuth T, Sieg J, Stohn T, Rarey M. Gutermuth T, et al. Among authors: sieg j. J Chem Inf Model. 2023 Apr 24;63(8):2573-2585. doi: 10.1021/acs.jcim.3c00100. Epub 2023 Apr 5. J Chem Inf Model. 2023. PMID: 37018549

6

Searching similar local 3D micro-environments in protein structure databases with MicroMiner.

Sieg J, Rarey M. Sieg J, et al. Brief Bioinform. 2023 Sep 22;24(6):bbad357. doi: 10.1093/bib/bbad357. Brief Bioinform. 2023. PMID: 37833838

7

In vivo-like nearest neighbor parameters improve prediction of fractional RNA base-pairing in cells.

Sieg JP, Jolley EA, Huot MJ, Babitzke P, Bevilacqua PC. Sieg JP, et al. Nucleic Acids Res. 2023 Nov 10;51(20):11298-11317. doi: 10.1093/nar/gkad807. Nucleic Acids Res. 2023. PMID: 37855684 Free PMC article.

8

MeltR software provides facile determination of nucleic acid thermodynamics.

Sieg JP, Arteaga SJ, Znosko BM, Bevilacqua PC. Sieg JP, et al. Biophys Rep (N Y). 2023 Mar 2;3(2):100101. doi: 10.1016/j.bpr.2023.100101. eCollection 2023 Jun 14. Biophys Rep (N Y). 2023. PMID: 37006960 Free PMC article.

9

Co-curricular Immersion as a Public-Private Capacity Building Activity.

Reddy A, Sieg J, Ristevski E, Polaconda SS, Buck J, Guenther R, Jones AM, Sweet L, Williams MR, Drummond CK. Reddy A, et al. Among authors: sieg j. Biomed Eng Educ. 2023 Jan 17:1-14. doi: 10.1007/s43683-022-00098-9. Online ahead of print. Biomed Eng Educ. 2023. PMID: 36686625 Free PMC article.

10

The Metabolome Weakens RNA Thermodynamic Stability and Strengthens RNA Chemical Stability.

Sieg JP, McKinley LN, Huot MJ, Yennawar NH, Bevilacqua PC. Sieg JP, et al. Biochemistry. 2022 Nov 15;61(22):2579-2591. doi: 10.1021/acs.biochem.2c00488. Epub 2022 Oct 28. Biochemistry. 2022. PMID: 36306436 Free PMC article.

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