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Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus.
Driebe EM, Sahl JW, Roe C, Bowers JR, Schupp JM, Gillece JD, Kelley E, Price LB, Pearson TR, Hepp CM, Brzoska PM, Cummings CA, Furtado MR, Andersen PS, Stegger M, Engelthaler DM, Keim PS. Driebe EM, et al. Among authors: brzoska pm. PLoS One. 2015 Jul 10;10(7):e0130955. doi: 10.1371/journal.pone.0130955. eCollection 2015. PLoS One. 2015. PMID: 26161978 Free PMC article.
SARS-CoV-2 variants of concern surveillance including Omicron using RT-PCR-based genotyping offers comparable performance to whole genome sequencing.
Vanoni S, Matulevicius A, Avdiu B, Scantamburlo G, Ulekleiv C, Brzoska PM, Furtado MR, Feenstra JDM, Rico A, Gandhi M, Giacobazzi E, Masi E, Paulmichl M, Nofziger C. Vanoni S, et al. Among authors: brzoska pm. Front Cell Infect Microbiol. 2022 Nov 3;12:960065. doi: 10.3389/fcimb.2022.960065. eCollection 2022. Front Cell Infect Microbiol. 2022. PMID: 36405967 Free PMC article.
Accurate, rapid and high-throughput detection of strain-specific polymorphisms in Bacillus anthracis and Yersinia pestis by next-generation sequencing.
Cummings CA, Bormann Chung CA, Fang R, Barker M, Brzoska P, Williamson PC, Beaudry J, Matthews M, Schupp J, Wagner DM, Birdsell D, Vogler AJ, Furtado MR, Keim P, Budowle B. Cummings CA, et al. Investig Genet. 2010 Sep 1;1(1):5. doi: 10.1186/2041-2223-1-5. Investig Genet. 2010. PMID: 21092340 Free PMC article.
A Method for Variant Agnostic Detection of SARS-CoV-2, Rapid Monitoring of Circulating Variants, and Early Detection of Emergent Variants Such as Omicron.
Lai E, Kennedy EB, Lozach J, Hayashibara K, Davis-Turak J, Becker D, Brzoska P, Cassens T, Diamond E, Gandhi M, Greninger AL, Hajian P, Leonetti NA, Nguyen JM, O'Donovan KMC, Peck T, Ramirez JM 3rd, Roychoudhury P, Sandoval E, Wesselman C, Wesselman T, White S, Williams S, Wong D, Yu Y, Creager RS. Lai E, et al. J Clin Microbiol. 2022 Jul 20;60(7):e0034222. doi: 10.1128/jcm.00342-22. Epub 2022 Jun 29. J Clin Microbiol. 2022. PMID: 35766514 Free PMC article.
Comparative analysis of genome sequences covering the seven cronobacter species.
Joseph S, Desai P, Ji Y, Cummings CA, Shih R, Degoricija L, Rico A, Brzoska P, Hamby SE, Masood N, Hariri S, Sonbol H, Chuzhanova N, McClelland M, Furtado MR, Forsythe SJ. Joseph S, et al. PLoS One. 2012;7(11):e49455. doi: 10.1371/journal.pone.0049455. Epub 2012 Nov 16. PLoS One. 2012. PMID: 23166675 Free PMC article.
An efficient and high-throughput approach for experimental validation of novel human gene predictions.
Brzoska PM, Brown C, Cassel M, Ceccardi T, Di Francisco V, Dubman A, Evans J, Fang R, Harris M, Hoover J, Hu F, Larry C, Li P, Malicdem M, Maltchenko S, Shannon M, Perkins S, Poulter K, Webster-Laig M, Xiao C, Young S, Spier G, Guegler K, Gilbert D, Samaha RR. Brzoska PM, et al. Genomics. 2006 Apr;87(4):437-45. doi: 10.1016/j.ygeno.2005.11.016. Epub 2006 Jan 9. Genomics. 2006. PMID: 16406193 Free article.
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