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ePlatypus: an ecosystem for computational analysis of immunogenomics data.
Bioinformatics. 2023 Sep 2;39(9):btad553. doi: 10.1093/bioinformatics/btad553.
Bioinformatics. 2023.
PMID: 37682115
Free PMC article.
Generation of a single-cell B cell atlas of antibody repertoires and transcriptomes to identify signatures associated with antigen specificity.
Agrafiotis A, Neumeier D, Hong KL, Chowdhury T, Ehling R, Kuhn R, Sandu I, Kreiner V, Cotet TS, Shlesinger D, Laslo D, Anzböck S, Starkie D, Lightwood DJ, Oxenius A, Reddy ST, Yermanos A.
Agrafiotis A, et al. Among authors: cotet ts.
iScience. 2023 Jan 25;26(3):106055. doi: 10.1016/j.isci.2023.106055. eCollection 2023 Mar 17.
iScience. 2023.
PMID: 36852274
Free PMC article.
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Persistent virus-specific and clonally expanded antibody-secreting cells respond to induced self-antigen in the CNS.
Agrafiotis A, Dizerens R, Vincenti I, Wagner I, Kuhn R, Shlesinger D, Manero-Carranza M, Cotet TS, Hong KL, Page N, Fonta N, Shammas G, Mariotte A, Piccinno M, Kreutzfeldt M, Gruntz B, Ehling R, Genovese A, Pedrioli A, Dounas A, Franzenburg S, Tumani H, Kümpfel T, Kavaka V, Gerdes LA, Dornmair K, Beltrán E, Oxenius A, Reddy ST, Merkler D, Yermanos A.
Agrafiotis A, et al. Among authors: cotet ts.
Acta Neuropathol. 2023 Mar;145(3):335-355. doi: 10.1007/s00401-023-02537-5. Epub 2023 Jan 25.
Acta Neuropathol. 2023.
PMID: 36695896
Free PMC article.
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Phenotypic determinism and stochasticity in antibody repertoires of clonally expanded plasma cells.
Neumeier D, Yermanos A, Agrafiotis A, Csepregi L, Chowdhury T, Ehling RA, Kuhn R, Cotet TS, Brisset-Di Roberto R, Di Tacchio M, Antonialli R, Starkie D, Lightwood DJ, Oxenius A, Reddy ST.
Neumeier D, et al. Among authors: cotet ts.
Proc Natl Acad Sci U S A. 2022 May 3;119(18):e2113766119. doi: 10.1073/pnas.2113766119. Epub 2022 Apr 29.
Proc Natl Acad Sci U S A. 2022.
PMID: 35486691
Free PMC article.
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Progress and challenges for the machine learning-based design of fit-for-purpose monoclonal antibodies.
Akbar R, Bashour H, Rawat P, Robert PA, Smorodina E, Cotet TS, Flem-Karlsen K, Frank R, Mehta BB, Vu MH, Zengin T, Gutierrez-Marcos J, Lund-Johansen F, Andersen JT, Greiff V.
Akbar R, et al. Among authors: cotet ts.
MAbs. 2022 Jan-Dec;14(1):2008790. doi: 10.1080/19420862.2021.2008790.
MAbs. 2022.
PMID: 35293269
Free PMC article.
Review.
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