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A mitochondrial genome assembly of the opal chimaera, Chimaera opalescens Luchetti, Iglésias et Sellos 2011, using PacBio HiFi long reads.
Vilas-Arrondo N, Gomes-Dos-Santos A, Pérez M, Baldó F, Veríssimo A, Catarino D, Machado AM, Román-Marcote E, Bañón R, Froufe E, Castro LFC. Vilas-Arrondo N, et al. Mitochondrial DNA B Resour. 2022 Mar 2;7(3):434-437. doi: 10.1080/23802359.2022.2044403. eCollection 2022. Mitochondrial DNA B Resour. 2022. PMID: 35274036 Free PMC article.
Cartilaginous fishes offer unique insights into the evolution of the nuclear receptor gene repertoire in gnathostomes.
Fonseca E, Machado AM, Vilas-Arrondo N, Gomes-Dos-Santos A, Veríssimo A, Esteves P, Almeida T, Themudo G, Ruivo R, Pérez M, da Fonseca R, Santos MM, Froufe E, Román-Marcote E, Venkatesh B, Castro LFC. Fonseca E, et al. Gen Comp Endocrinol. 2020 Sep 1;295:113527. doi: 10.1016/j.ygcen.2020.113527. Epub 2020 Jun 8. Gen Comp Endocrinol. 2020. PMID: 32526329
The Crown Pearl: a draft genome assembly of the European freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758).
Gomes-Dos-Santos A, Lopes-Lima M, Machado AM, Marcos Ramos A, Usié A, Bolotov IN, Vikhrev IV, Breton S, Castro LFC, da Fonseca RR, Geist J, Österling ME, Prié V, Teixeira A, Gan HM, Simakov O, Froufe E. Gomes-Dos-Santos A, et al. DNA Res. 2021 May 2;28(2):dsab002. doi: 10.1093/dnares/dsab002. DNA Res. 2021. PMID: 33755103 Free PMC article.
The gill transcriptome of threatened European freshwater mussels.
Gomes-Dos-Santos A, Machado AM, Castro LFC, Prié V, Teixeira A, Lopes-Lima M, Froufe E. Gomes-Dos-Santos A, et al. Sci Data. 2022 Aug 13;9(1):494. doi: 10.1038/s41597-022-01613-x. Sci Data. 2022. PMID: 35963883 Free PMC article.
A novel assembly pipeline and functional annotations for targeted sequencing: A case study on the globally threatened Margaritiferidae (Bivalvia: Unionida).
Gomes-Dos-Santos A, Froufe E, Pfeiffer JM, Johnson NA, Smith CH, Machado AM, C Castro LF, Do VT, Hattori A, Garrison N, Whelan NV, Bolotov IN, Vikhrev IV, Kondakov AV, Ghamizi M, Prié V, Bogan AE, Lopes Lima M. Gomes-Dos-Santos A, et al. Mol Ecol Resour. 2023 Aug;23(6):1403-1422. doi: 10.1111/1755-0998.13802. Epub 2023 Apr 24. Mol Ecol Resour. 2023. PMID: 37092367
49 results