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Prediction of histone post-translational modification patterns based on nascent transcription data.
Nat Genet. 2022 Mar;54(3):295-305. doi: 10.1038/s41588-022-01026-x. Epub 2022 Mar 10.
Nat Genet. 2022.
PMID: 35273399
Free PMC article.
Characterizing RNA stability genome-wide through combined analysis of PRO-seq and RNA-seq data.
Blumberg A, Zhao Y, Huang YF, Dukler N, Rice EJ, Chivu AG, Krumholz K, Danko CG, Siepel A.
Blumberg A, et al. Among authors: chivu ag.
BMC Biol. 2021 Feb 15;19(1):30. doi: 10.1186/s12915-021-00949-x.
BMC Biol. 2021.
PMID: 33588838
Free PMC article.
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SETD2 Haploinsufficiency Enhances Germinal Center-Associated AICDA Somatic Hypermutation to Drive B-cell Lymphomagenesis.
Leung W, Teater M, Durmaz C, Meydan C, Chivu AG, Chadburn A, Rice EJ, Muley A, Camarillo JM, Arivalagan J, Li Z, Flowers CR, Kelleher NL, Danko CG, Imielinski M, Dave SS, Armstrong SA, Mason CE, Melnick AM.
Leung W, et al. Among authors: chivu ag.
Cancer Discov. 2022 Jul 6;12(7):1782-1803. doi: 10.1158/2159-8290.CD-21-1514.
Cancer Discov. 2022.
PMID: 35443279
Free PMC article.
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RNA Pol II pausing facilitates phased pluripotency transitions by buffering transcription.
Abuhashem A, Chivu AG, Zhao Y, Rice EJ, Siepel A, Danko CG, Hadjantonakis AK.
Abuhashem A, et al. Among authors: chivu ag.
Genes Dev. 2022 Aug 18;36(13-14):770-89. doi: 10.1101/gad.349565.122. Online ahead of print.
Genes Dev. 2022.
PMID: 35981753
Free PMC article.
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RNA polymerase II dynamics shape enhancer-promoter interactions.
Barshad G, Lewis JJ, Chivu AG, Abuhashem A, Krietenstein N, Rice EJ, Ma Y, Wang Z, Rando OJ, Hadjantonakis AK, Danko CG.
Barshad G, et al. Among authors: chivu ag.
Nat Genet. 2023 Aug;55(8):1370-1380. doi: 10.1038/s41588-023-01442-7. Epub 2023 Jul 10.
Nat Genet. 2023.
PMID: 37430091
Free PMC article.
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Cohesin couples transcriptional bursting probabilities of inducible enhancers and promoters.
Robles-Rebollo I, Cuartero S, Canellas-Socias A, Wells S, Karimi MM, Mereu E, Chivu AG, Heyn H, Whilding C, Dormann D, Marguerat S, Rioja I, Prinjha RK, Stumpf MPH, Fisher AG, Merkenschlager M.
Robles-Rebollo I, et al. Among authors: chivu ag.
Nat Commun. 2022 Jul 27;13(1):4342. doi: 10.1038/s41467-022-31192-9.
Nat Commun. 2022.
PMID: 35896525
Free PMC article.
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Evolution of promoter-proximal pausing enabled a new layer of transcription control.
Chivu AG, Abuhashem A, Barshad G, Rice EJ, Leger MM, Vill AC, Wong W, Brady R, Smith JJ, Wikramanayake AH, Arenas-Mena C, Brito IL, Ruiz-Trillo I, Hadjantonakis AK, Lis JT, Lewis JJ, Danko CG.
Chivu AG, et al.
Res Sq [Preprint]. 2023 Mar 24:rs.3.rs-2679520. doi: 10.21203/rs.3.rs-2679520/v1.
Res Sq. 2023.
PMID: 36993251
Free PMC article.
Preprint.
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