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The MYC oncoprotein directly interacts with its chromatin cofactor PNUTS to recruit PP1 phosphatase.
Nucleic Acids Res. 2022 Apr 8;50(6):3505-3522. doi: 10.1093/nar/gkac138.
Nucleic Acids Res. 2022.
PMID: 35244724
Free PMC article.
Multiple direct interactions of TBP with the MYC oncoprotein.
Wei Y, Resetca D, Li Z, Johansson-Åkhe I, Ahlner A, Helander S, Wallenhammar A, Morad V, Raught B, Wallner B, Kokubo T, Tong Y, Penn LZ, Sunnerhagen M.
Wei Y, et al. Among authors: johansson akhe i.
Nat Struct Mol Biol. 2019 Nov;26(11):1035-1043. doi: 10.1038/s41594-019-0321-z. Epub 2019 Nov 4.
Nat Struct Mol Biol. 2019.
PMID: 31686052
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Predicting protein-peptide interaction sites using distant protein complexes as structural templates.
Johansson-Åkhe I, Mirabello C, Wallner B.
Johansson-Åkhe I, et al.
Sci Rep. 2019 Mar 12;9(1):4267. doi: 10.1038/s41598-019-38498-7.
Sci Rep. 2019.
PMID: 30862810
Free PMC article.
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InterPepScore: a deep learning score for improving the FlexPepDock refinement protocol.
Johansson-Åkhe I, Wallner B.
Johansson-Åkhe I, et al.
Bioinformatics. 2022 Jun 13;38(12):3209-3215. doi: 10.1093/bioinformatics/btac325.
Bioinformatics. 2022.
PMID: 35575349
Free PMC article.
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InterPep2: global peptide-protein docking using interaction surface templates.
Johansson-Åkhe I, Mirabello C, Wallner B.
Johansson-Åkhe I, et al.
Bioinformatics. 2020 Apr 15;36(8):2458-2465. doi: 10.1093/bioinformatics/btaa005.
Bioinformatics. 2020.
PMID: 31917413
Free PMC article.
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Improving peptide-protein docking with AlphaFold-Multimer using forced sampling.
Johansson-Åkhe I, Wallner B.
Johansson-Åkhe I, et al.
Front Bioinform. 2022 Sep 26;2:959160. doi: 10.3389/fbinf.2022.959160. eCollection 2022.
Front Bioinform. 2022.
PMID: 36304330
Free PMC article.
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InterPepRank: Assessment of Docked Peptide Conformations by a Deep Graph Network.
Johansson-Åkhe I, Mirabello C, Wallner B.
Johansson-Åkhe I, et al.
Front Bioinform. 2021 Oct 25;1:763102. doi: 10.3389/fbinf.2021.763102. eCollection 2021.
Front Bioinform. 2021.
PMID: 36303778
Free PMC article.
Review.
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