Theis FJ - Search Results

1

Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbation.

Brunner AD, Thielert M, Vasilopoulou C, Ammar C, Coscia F, Mund A, Hoerning OB, Bache N, Apalategui A, Lubeck M, Richter S, Fischer DS, Raether O, Park MA, Meier F, Theis FJ, Mann M. Brunner AD, et al. Among authors: theis fj. Mol Syst Biol. 2022 Mar;18(3):e10798. doi: 10.15252/msb.202110798. Mol Syst Biol. 2022. PMID: 35226415 Free PMC article.

2

A unilateral negative feedback loop between miR-200 microRNAs and Sox2/E2F3 controls neural progenitor cell-cycle exit and differentiation.

Peng C, Li N, Ng YK, Zhang J, Meier F, Theis FJ, Merkenschlager M, Chen W, Wurst W, Prakash N. Peng C, et al. Among authors: theis fj. J Neurosci. 2012 Sep 19;32(38):13292-308. doi: 10.1523/JNEUROSCI.2124-12.2012. J Neurosci. 2012. PMID: 22993445 Free PMC article.

3

Impulse model-based differential expression analysis of time course sequencing data.

Fischer DS, Theis FJ, Yosef N. Fischer DS, et al. Among authors: theis fj. Nucleic Acids Res. 2018 Nov 16;46(20):e119. doi: 10.1093/nar/gky675. Nucleic Acids Res. 2018. PMID: 30102402 Free PMC article.

4

An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics.

Angelidis I, Simon LM, Fernandez IE, Strunz M, Mayr CH, Greiffo FR, Tsitsiridis G, Ansari M, Graf E, Strom TM, Nagendran M, Desai T, Eickelberg O, Mann M, Theis FJ, Schiller HB. Angelidis I, et al. Among authors: theis fj. Nat Commun. 2019 Feb 27;10(1):963. doi: 10.1038/s41467-019-08831-9. Nat Commun. 2019. PMID: 30814501 Free PMC article.

5

Inferring population dynamics from single-cell RNA-sequencing time series data.

Fischer DS, Fiedler AK, Kernfeld EM, Genga RMJ, Bastidas-Ponce A, Bakhti M, Lickert H, Hasenauer J, Maehr R, Theis FJ. Fischer DS, et al. Among authors: theis fj. Nat Biotechnol. 2019 Apr;37(4):461-468. doi: 10.1038/s41587-019-0088-0. Epub 2019 Apr 1. Nat Biotechnol. 2019. PMID: 30936567 Free PMC article.

6

Concepts and limitations for learning developmental trajectories from single cell genomics.

Tritschler S, Büttner M, Fischer DS, Lange M, Bergen V, Lickert H, Theis FJ. Tritschler S, et al. Among authors: theis fj. Development. 2019 Jun 27;146(12):dev170506. doi: 10.1242/dev.170506. Development. 2019. PMID: 31249007 Review.

7

MPRAnalyze: statistical framework for massively parallel reporter assays.

Ashuach T, Fischer DS, Kreimer A, Ahituv N, Theis FJ, Yosef N. Ashuach T, et al. Among authors: theis fj. Genome Biol. 2019 Sep 2;20(1):183. doi: 10.1186/s13059-019-1787-z. Genome Biol. 2019. PMID: 31477158 Free PMC article.

8

Automatic identification of relevant genes from low-dimensional embeddings of single-cell RNA-seq data.

Angerer P, Fischer DS, Theis FJ, Scialdone A, Marr C. Angerer P, et al. Among authors: theis fj. Bioinformatics. 2020 Aug 1;36(15):4291-4295. doi: 10.1093/bioinformatics/btaa198. Bioinformatics. 2020. PMID: 32207520 Free PMC article.

9

The proteome landscape of the kingdoms of life.

Müller JB, Geyer PE, Colaço AR, Treit PV, Strauss MT, Oroshi M, Doll S, Virreira Winter S, Bader JM, Köhler N, Theis F, Santos A, Mann M. Müller JB, et al. Nature. 2020 Jun;582(7813):592-596. doi: 10.1038/s41586-020-2402-x. Epub 2020 Jun 17. Nature. 2020. PMID: 32555458

10

Predicting antigen specificity of single T cells based on TCR CDR3 regions.

Fischer DS, Wu Y, Schubert B, Theis FJ. Fischer DS, et al. Among authors: theis fj. Mol Syst Biol. 2020 Aug;16(8):e9416. doi: 10.15252/msb.20199416. Mol Syst Biol. 2020. PMID: 32779888 Free PMC article.

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