Oldfield AJ - Search Results

1

Histone marks regulate the epithelial-to-mesenchymal transition via alternative splicing.

Segelle A, Núñez-Álvarez Y, Oldfield AJ, Webb KM, Voigt P, Luco RF. Segelle A, et al. Among authors: oldfield aj. Cell Rep. 2022 Feb 15;38(7):110357. doi: 10.1016/j.celrep.2022.110357. Cell Rep. 2022. PMID: 35172149 Free article.

2

Splicing-associated chromatin signatures: a combinatorial and position-dependent role for histone marks in splicing definition.

Agirre E, Oldfield AJ, Bellora N, Segelle A, Luco RF. Agirre E, et al. Among authors: oldfield aj. Nat Commun. 2021 Jan 29;12(1):682. doi: 10.1038/s41467-021-20979-x. Nat Commun. 2021. PMID: 33514745 Free PMC article.

3

IRFinder-S: a comprehensive suite to discover and explore intron retention.

Lorenzi C, Barriere S, Arnold K, Luco RF, Oldfield AJ, Ritchie W. Lorenzi C, et al. Among authors: oldfield aj. Genome Biol. 2021 Nov 8;22(1):307. doi: 10.1186/s13059-021-02515-8. Genome Biol. 2021. PMID: 34749764 Free PMC article.

4

A cell-to-patient machine learning transfer approach uncovers novel basal-like breast cancer prognostic markers amongst alternative splice variants.

Villemin JP, Lorenzi C, Cabrillac MS, Oldfield A, Ritchie W, Luco RF. Villemin JP, et al. BMC Biol. 2021 Apr 12;19(1):70. doi: 10.1186/s12915-021-01002-7. BMC Biol. 2021. PMID: 33845831 Free PMC article.

5

SETDB1/NSD-dependent H3K9me3/H3K36me3 dual heterochromatin maintains gene expression profiles by bookmarking poised enhancers.

Barral A, Pozo G, Ducrot L, Papadopoulos GL, Sauzet S, Oldfield AJ, Cavalli G, Déjardin J. Barral A, et al. Among authors: oldfield aj. Mol Cell. 2022 Feb 17;82(4):816-832.e12. doi: 10.1016/j.molcel.2021.12.037. Epub 2022 Jan 25. Mol Cell. 2022. PMID: 35081363 Free PMC article.

6

Intragenic Enhancers Attenuate Host Gene Expression.

Cinghu S, Yang P, Kosak JP, Conway AE, Kumar D, Oldfield AJ, Adelman K, Jothi R. Cinghu S, et al. Among authors: oldfield aj. Mol Cell. 2017 Oct 5;68(1):104-117.e6. doi: 10.1016/j.molcel.2017.09.010. Mol Cell. 2017. PMID: 28985501 Free PMC article.

7

Histone-fold domain protein NF-Y promotes chromatin accessibility for cell type-specific master transcription factors.

Oldfield AJ, Yang P, Conway AE, Cinghu S, Freudenberg JM, Yellaboina S, Jothi R. Oldfield AJ, et al. Mol Cell. 2014 Sep 4;55(5):708-22. doi: 10.1016/j.molcel.2014.07.005. Epub 2014 Aug 14. Mol Cell. 2014. PMID: 25132174 Free PMC article.

8

TALC: Transcript-level Aware Long-read Correction.

Broseus L, Thomas A, Oldfield AJ, Severac D, Dubois E, Ritchie W. Broseus L, et al. Among authors: oldfield aj. Bioinformatics. 2020 Dec 22;36(20):5000-5006. doi: 10.1093/bioinformatics/btaa634. Bioinformatics. 2020. PMID: 32910174

9

NF-Y controls fidelity of transcription initiation at gene promoters through maintenance of the nucleosome-depleted region.

Oldfield AJ, Henriques T, Kumar D, Burkholder AB, Cinghu S, Paulet D, Bennett BD, Yang P, Scruggs BS, Lavender CA, Rivals E, Adelman K, Jothi R. Oldfield AJ, et al. Nat Commun. 2019 Jul 11;10(1):3072. doi: 10.1038/s41467-019-10905-7. Nat Commun. 2019. PMID: 31296853 Free PMC article.

10

Multi-omic Profiling Reveals Dynamics of the Phased Progression of Pluripotency.

Yang P, Humphrey SJ, Cinghu S, Pathania R, Oldfield AJ, Kumar D, Perera D, Yang JYH, James DE, Mann M, Jothi R. Yang P, et al. Among authors: oldfield aj. Cell Syst. 2019 May 22;8(5):427-445.e10. doi: 10.1016/j.cels.2019.03.012. Epub 2019 May 8. Cell Syst. 2019. PMID: 31078527 Free PMC article.

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