Schilling O - Search Results

1

Democratizing data-independent acquisition proteomics analysis on public cloud infrastructures via the Galaxy framework.

Fahrner M, Föll MC, Grüning BA, Bernt M, Röst H, Schilling O. Fahrner M, et al. Among authors: schilling o. Gigascience. 2022 Feb 15;11:giac005. doi: 10.1093/gigascience/giac005. Gigascience. 2022. PMID: 35166338 Free PMC article.

2

OpenMS: a flexible open-source software platform for mass spectrometry data analysis.

Röst HL, Sachsenberg T, Aiche S, Bielow C, Weisser H, Aicheler F, Andreotti S, Ehrlich HC, Gutenbrunner P, Kenar E, Liang X, Nahnsen S, Nilse L, Pfeuffer J, Rosenberger G, Rurik M, Schmitt U, Veit J, Walzer M, Wojnar D, Wolski WE, Schilling O, Choudhary JS, Malmström L, Aebersold R, Reinert K, Kohlbacher O. Röst HL, et al. Among authors: schilling o. Nat Methods. 2016 Aug 30;13(9):741-8. doi: 10.1038/nmeth.3959. Nat Methods. 2016. PMID: 27575624

3

Identification of tissue damage, extracellular matrix remodeling and bacterial challenge as common mechanisms associated with high-risk cutaneous squamous cell carcinomas.

Föll MC, Fahrner M, Gretzmeier C, Thoma K, Biniossek ML, Kiritsi D, Meiss F, Schilling O, Nyström A, Kern JS. Föll MC, et al. Among authors: schilling o. Matrix Biol. 2018 Mar;66:1-21. doi: 10.1016/j.matbio.2017.11.004. Epub 2017 Nov 20. Matrix Biol. 2018. PMID: 29158163

4

Proteomic Characterization of Prostate Cancer to Distinguish Nonmetastasizing and Metastasizing Primary Tumors and Lymph Node Metastases.

Müller AK, Föll M, Heckelmann B, Kiefer S, Werner M, Schilling O, Biniossek ML, Jilg CA, Drendel V. Müller AK, et al. Among authors: schilling o. Neoplasia. 2018 Feb;20(2):140-151. doi: 10.1016/j.neo.2017.10.009. Epub 2017 Dec 14. Neoplasia. 2018. PMID: 29248718 Free PMC article.

5

Reproducible proteomics sample preparation for single FFPE tissue slices using acid-labile surfactant and direct trypsinization.

Föll MC, Fahrner M, Oria VO, Kühs M, Biniossek ML, Werner M, Bronsert P, Schilling O. Föll MC, et al. Among authors: schilling o. Clin Proteomics. 2018 Mar 6;15:11. doi: 10.1186/s12014-018-9188-y. eCollection 2018. Clin Proteomics. 2018. PMID: 29527141 Free PMC article.

6

Proteome Profiling of Primary Pancreatic Ductal Adenocarcinomas Undergoing Additive Chemoradiation Link ALDH1A1 to Early Local Recurrence and Chemoradiation Resistance.

Oria VO, Bronsert P, Thomsen AR, Föll MC, Zamboglou C, Hannibal L, Behringer S, Biniossek ML, Schreiber C, Grosu AL, Bolm L, Rades D, Keck T, Werner M, Wellner UF, Schilling O. Oria VO, et al. Among authors: schilling o. Transl Oncol. 2018 Dec;11(6):1307-1322. doi: 10.1016/j.tranon.2018.08.001. Epub 2018 Aug 30. Transl Oncol. 2018. PMID: 30172883 Free PMC article.

7

Accessible and reproducible mass spectrometry imaging data analysis in Galaxy.

Föll MC, Moritz L, Wollmann T, Stillger MN, Vockert N, Werner M, Bronsert P, Rohr K, Grüning BA, Schilling O. Föll MC, et al. Among authors: schilling o. Gigascience. 2019 Dec 1;8(12):giz143. doi: 10.1093/gigascience/giz143. Gigascience. 2019. PMID: 31816088 Free PMC article.

8

Depletion of histone methyltransferase KMT9 inhibits lung cancer cell proliferation by inducing non-apoptotic cell death.

Baumert HM, Metzger E, Fahrner M, George J, Thomas RK, Schilling O, Schüle R. Baumert HM, et al. Among authors: schilling o. Cancer Cell Int. 2020 Feb 17;20:52. doi: 10.1186/s12935-020-1141-2. eCollection 2020. Cancer Cell Int. 2020. PMID: 32095117 Free PMC article.

9

Deep multiple instance learning classifies subtissue locations in mass spectrometry images from tissue-level annotations.

Guo D, Föll MC, Volkmann V, Enderle-Ammour K, Bronsert P, Schilling O, Vitek O. Guo D, et al. Among authors: schilling o. Bioinformatics. 2020 Jul 1;36(Suppl_1):i300-i308. doi: 10.1093/bioinformatics/btaa436. Bioinformatics. 2020. PMID: 32657378 Free PMC article.

10

Discovery of a small protein factor involved in the coordinated degradation of phycobilisomes in cyanobacteria.

Krauspe V, Fahrner M, Spät P, Steglich C, Frankenberg-Dinkel N, Maček B, Schilling O, Hess WR. Krauspe V, et al. Among authors: schilling o. Proc Natl Acad Sci U S A. 2021 Feb 2;118(5):e2012277118. doi: 10.1073/pnas.2012277118. Proc Natl Acad Sci U S A. 2021. PMID: 33509926 Free PMC article.

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