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Chiral evasion and stereospecific antifolate resistance in Staphylococcus aureus.
PLoS Comput Biol. 2022 Feb 10;18(2):e1009855. doi: 10.1371/journal.pcbi.1009855. eCollection 2022 Feb.
PLoS Comput Biol. 2022.
PMID: 35143481
Free PMC article.
Toward Broad Spectrum Dihydrofolate Reductase Inhibitors Targeting Trimethoprim Resistant Enzymes Identified in Clinical Isolates of Methicillin Resistant Staphylococcus aureus.
Reeve SM, Si D, Krucinska J, Yan Y, Viswanathan K, Wang S, Holt GT, Frenkel MS, Ojewole AA, Estrada A, Agabiti SS, Alverson JB, Gibson ND, Priestley ND, Wiemer AJ, Donald BR, Wright DL.
Reeve SM, et al. Among authors: ojewole aa.
ACS Infect Dis. 2019 Nov 8;5(11):1896-1906. doi: 10.1021/acsinfecdis.9b00222. Epub 2019 Oct 15.
ACS Infect Dis. 2019.
PMID: 31565920
Free PMC article.
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BBK* (Branch and Bound Over K*): A Provable and Efficient Ensemble-Based Protein Design Algorithm to Optimize Stability and Binding Affinity Over Large Sequence Spaces.
Ojewole AA, Jou JD, Fowler VG, Donald BR.
Ojewole AA, et al.
J Comput Biol. 2018 Jul;25(7):726-739. doi: 10.1089/cmb.2017.0267. Epub 2018 Mar 13.
J Comput Biol. 2018.
PMID: 29641249
Free PMC article.
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Novel, provable algorithms for efficient ensemble-based computational protein design and their application to the redesign of the c-Raf-RBD:KRas protein-protein interface.
Lowegard AU, Frenkel MS, Holt GT, Jou JD, Ojewole AA, Donald BR.
Lowegard AU, et al. Among authors: ojewole aa.
PLoS Comput Biol. 2020 Jun 8;16(6):e1007447. doi: 10.1371/journal.pcbi.1007447. eCollection 2020 Jun.
PLoS Comput Biol. 2020.
PMID: 32511232
Free PMC article.
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OSPREY Predicts Resistance Mutations Using Positive and Negative Computational Protein Design.
Ojewole A, Lowegard A, Gainza P, Reeve SM, Georgiev I, Anderson AC, Donald BR.
Ojewole A, et al.
Methods Mol Biol. 2017;1529:291-306. doi: 10.1007/978-1-4939-6637-0_15.
Methods Mol Biol. 2017.
PMID: 27914058
Free PMC article.
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OSPREY 3.0: Open-source protein redesign for you, with powerful new features.
Hallen MA, Martin JW, Ojewole A, Jou JD, Lowegard AU, Frenkel MS, Gainza P, Nisonoff HM, Mukund A, Wang S, Holt GT, Zhou D, Dowd E, Donald BR.
Hallen MA, et al.
J Comput Chem. 2018 Nov 15;39(30):2494-2507. doi: 10.1002/jcc.25522. Epub 2018 Oct 14.
J Comput Chem. 2018.
PMID: 30368845
Free PMC article.
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