Yang C - Search Results

1

AMPlify: attentive deep learning model for discovery of novel antimicrobial peptides effective against WHO priority pathogens.

Li C, Sutherland D, Hammond SA, Yang C, Taho F, Bergman L, Houston S, Warren RL, Wong T, Hoang LMN, Cameron CE, Helbing CC, Birol I. Li C, et al. Among authors: yang c. BMC Genomics. 2022 Jan 25;23(1):77. doi: 10.1186/s12864-022-08310-4. BMC Genomics. 2022. PMID: 35078402 Free PMC article.

2

Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism.

Warren RL, Keeling CI, Yuen MM, Raymond A, Taylor GA, Vandervalk BP, Mohamadi H, Paulino D, Chiu R, Jackman SD, Robertson G, Yang C, Boyle B, Hoffmann M, Weigel D, Nelson DR, Ritland C, Isabel N, Jaquish B, Yanchuk A, Bousquet J, Jones SJ, MacKay J, Birol I, Bohlmann J. Warren RL, et al. Among authors: yang c. Plant J. 2015 Jul;83(2):189-212. doi: 10.1111/tpj.12886. Epub 2015 Jun 19. Plant J. 2015. PMID: 26017574 Free article.

3

LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads.

Warren RL, Yang C, Vandervalk BP, Behsaz B, Lagman A, Jones SJ, Birol I. Warren RL, et al. Among authors: yang c. Gigascience. 2015 Aug 4;4:35. doi: 10.1186/s13742-015-0076-3. eCollection 2015. Gigascience. 2015. PMID: 26244089 Free PMC article.

4

Konnector v2.0: pseudo-long reads from paired-end sequencing data.

Vandervalk BP, Yang C, Xue Z, Raghavan K, Chu J, Mohamadi H, Jackman SD, Chiu R, Warren RL, Birol I. Vandervalk BP, et al. Among authors: yang c. BMC Med Genomics. 2015;8 Suppl 3(Suppl 3):S1. doi: 10.1186/1755-8794-8-S3-S1. Epub 2015 Sep 23. BMC Med Genomics. 2015. PMID: 26399504 Free PMC article.

5

Assembly of the Complete Sitka Spruce Chloroplast Genome Using 10X Genomics' GemCode Sequencing Data.

Coombe L, Warren RL, Jackman SD, Yang C, Vandervalk BP, Moore RA, Pleasance S, Coope RJ, Bohlmann J, Holt RA, Jones SJ, Birol I. Coombe L, et al. Among authors: yang c. PLoS One. 2016 Sep 15;11(9):e0163059. doi: 10.1371/journal.pone.0163059. eCollection 2016. PLoS One. 2016. PMID: 27632164 Free PMC article.

6

Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art.

Chu J, Mohamadi H, Warren RL, Yang C, Birol I. Chu J, et al. Among authors: yang c. Bioinformatics. 2017 Apr 15;33(8):1261-1270. doi: 10.1093/bioinformatics/btw811. Bioinformatics. 2017. PMID: 28003261 Free PMC article. Review.

7

NanoSim: nanopore sequence read simulator based on statistical characterization.

Yang C, Chu J, Warren RL, Birol I. Yang C, et al. Gigascience. 2017 Apr 1;6(4):1-6. doi: 10.1093/gigascience/gix010. Gigascience. 2017. PMID: 28327957 Free PMC article.

8

Recurrent tumor-specific regulation of alternative polyadenylation of cancer-related genes.

Xue Z, Warren RL, Gibb EA, MacMillan D, Wong J, Chiu R, Hammond SA, Yang C, Nip KM, Ennis CA, Hahn A, Reynolds S, Birol I. Xue Z, et al. Among authors: yang c. BMC Genomics. 2018 Jul 13;19(1):536. doi: 10.1186/s12864-018-4903-7. BMC Genomics. 2018. PMID: 30005633 Free PMC article.

9

Trans-NanoSim characterizes and simulates nanopore RNA-sequencing data.

Hafezqorani S, Yang C, Lo T, Nip KM, Warren RL, Birol I. Hafezqorani S, et al. Among authors: yang c. Gigascience. 2020 Jun 1;9(6):giaa061. doi: 10.1093/gigascience/giaa061. Gigascience. 2020. PMID: 32520350 Free PMC article.

10

RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes.

Nip KM, Chiu R, Yang C, Chu J, Mohamadi H, Warren RL, Birol I. Nip KM, et al. Among authors: yang c. Genome Res. 2020 Aug;30(8):1191-1200. doi: 10.1101/gr.260174.119. Epub 2020 Aug 17. Genome Res. 2020. PMID: 32817073 Free PMC article.

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