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Flimma: a federated and privacy-aware tool for differential gene expression analysis.
Zolotareva O, Nasirigerdeh R, Matschinske J, Torkzadehmahani R, Bakhtiari M, Frisch T, Späth J, Blumenthal DB, Abbasinejad A, Tieri P, Kaissis G, Rückert D, Wenke NK, List M, Baumbach J. Zolotareva O, et al. Among authors: baumbach j. Genome Biol. 2021 Dec 14;22(1):338. doi: 10.1186/s13059-021-02553-2. Genome Biol. 2021. PMID: 34906207 Free PMC article.
KeyPathwayMinerWeb: online multi-omics network enrichment.
List M, Alcaraz N, Dissing-Hansen M, Ditzel HJ, Mollenhauer J, Baumbach J. List M, et al. Among authors: baumbach j. Nucleic Acids Res. 2016 Jul 8;44(W1):W98-W104. doi: 10.1093/nar/gkw373. Epub 2016 May 5. Nucleic Acids Res. 2016. PMID: 27150809 Free PMC article.
Comprehensive analysis of high-throughput screens with HiTSeekR.
List M, Schmidt S, Christiansen H, Rehmsmeier M, Tan Q, Mollenhauer J, Baumbach J. List M, et al. Among authors: baumbach j. Nucleic Acids Res. 2016 Aug 19;44(14):6639-48. doi: 10.1093/nar/gkw554. Epub 2016 Jun 21. Nucleic Acids Res. 2016. PMID: 27330136 Free PMC article.
Efficient Management of High-Throughput Screening Libraries with SAVANAH.
List M, Elnegaard MP, Schmidt S, Christiansen H, Tan Q, Mollenhauer J, Baumbach J. List M, et al. Among authors: baumbach j. SLAS Discov. 2017 Feb;22(2):196-202. doi: 10.1177/1087057116673607. Epub 2016 Oct 13. SLAS Discov. 2017. PMID: 27729504 Free article.
Interactive microbial distribution analysis using BioAtlas.
Lund JB, List M, Baumbach J. Lund JB, et al. Among authors: baumbach j. Nucleic Acids Res. 2017 Jul 3;45(W1):W509-W513. doi: 10.1093/nar/gkx304. Nucleic Acids Res. 2017. PMID: 28460071 Free PMC article.
On the performance of de novo pathway enrichment.
Batra R, Alcaraz N, Gitzhofer K, Pauling J, Ditzel HJ, Hellmuth M, Baumbach J, List M. Batra R, et al. Among authors: baumbach j. NPJ Syst Biol Appl. 2017 Mar 3;3:6. doi: 10.1038/s41540-017-0007-2. eCollection 2017. NPJ Syst Biol Appl. 2017. PMID: 28649433 Free PMC article.
De novo pathway-based biomarker identification.
Alcaraz N, List M, Batra R, Vandin F, Ditzel HJ, Baumbach J. Alcaraz N, et al. Among authors: baumbach j. Nucleic Acids Res. 2017 Sep 19;45(16):e151. doi: 10.1093/nar/gkx642. Nucleic Acids Res. 2017. PMID: 28934488 Free PMC article.
378 results