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Multitasking in the gut: the X-ray structure of the multidomain BbgIII from Bifidobacterium bifidum offers possible explanations for its alternative functions.
Moroz OV, Blagova E, Lebedev AA, Sánchez Rodríguez F, Rigden DJ, Tams JW, Wilting R, Vester JK, Longhin E, Hansen GH, Krogh KBRM, Pache RA, Davies GJ, Wilson KS. Moroz OV, et al. Among authors: rigden dj. Acta Crystallogr D Struct Biol. 2021 Dec 1;77(Pt 12):1564-1578. doi: 10.1107/S2059798321010949. Epub 2021 Nov 17. Acta Crystallogr D Struct Biol. 2021. PMID: 34866612
Approaches to ab initio molecular replacement of α-helical transmembrane proteins.
Thomas JMH, Simkovic F, Keegan R, Mayans O, Zhang C, Zhang Y, Rigden DJ. Thomas JMH, et al. Among authors: rigden dj. Acta Crystallogr D Struct Biol. 2017 Dec 1;73(Pt 12):985-996. doi: 10.1107/S2059798317016436. Epub 2017 Nov 22. Acta Crystallogr D Struct Biol. 2017. PMID: 29199978 Free PMC article.
Recent developments in MrBUMP: better search-model preparation, graphical interaction with search models, and solution improvement and assessment.
Keegan RM, McNicholas SJ, Thomas JMH, Simpkin AJ, Simkovic F, Uski V, Ballard CC, Winn MD, Wilson KS, Rigden DJ. Keegan RM, et al. Among authors: rigden dj. Acta Crystallogr D Struct Biol. 2018 Mar 1;74(Pt 3):167-182. doi: 10.1107/S2059798318003455. Epub 2018 Mar 6. Acta Crystallogr D Struct Biol. 2018. PMID: 29533225 Free PMC article.
SIMBAD: a sequence-independent molecular-replacement pipeline.
Simpkin AJ, Simkovic F, Thomas JMH, Savko M, Lebedev A, Uski V, Ballard C, Wojdyr M, Wu R, Sanishvili R, Xu Y, Lisa MN, Buschiazzo A, Shepard W, Rigden DJ, Keegan RM. Simpkin AJ, et al. Among authors: rigden dj. Acta Crystallogr D Struct Biol. 2018 Jul 1;74(Pt 7):595-605. doi: 10.1107/S2059798318005752. Epub 2018 Jun 8. Acta Crystallogr D Struct Biol. 2018. PMID: 29968670 Free PMC article.
Molecular replacement using structure predictions from databases.
Simpkin AJ, Thomas JMH, Simkovic F, Keegan RM, Rigden DJ. Simpkin AJ, et al. Among authors: rigden dj. Acta Crystallogr D Struct Biol. 2019 Dec 1;75(Pt 12):1051-1062. doi: 10.1107/S2059798319013962. Epub 2019 Nov 19. Acta Crystallogr D Struct Biol. 2019. PMID: 31793899 Free PMC article.
Using Phaser and ensembles to improve the performance of SIMBAD.
Simpkin AJ, Simkovic F, Thomas JMH, Savko M, Lebedev A, Uski V, Ballard CC, Wojdyr M, Shepard W, Rigden DJ, Keegan RM. Simpkin AJ, et al. Among authors: rigden dj. Acta Crystallogr D Struct Biol. 2020 Jan 1;76(Pt 1):1-8. doi: 10.1107/S2059798319015031. Epub 2020 Jan 1. Acta Crystallogr D Struct Biol. 2020. PMID: 31909738 Free PMC article.
248 results