Malley JD - Search Results

1

What makes a good prediction? Feature importance and beginning to open the black box of machine learning in genetics.

Musolf AM, Holzinger ER, Malley JD, Bailey-Wilson JE. Musolf AM, et al. Among authors: malley jd. Hum Genet. 2022 Sep;141(9):1515-1528. doi: 10.1007/s00439-021-02402-z. Epub 2021 Dec 4. Hum Genet. 2022. PMID: 34862561 Free PMC article. Review.

2

Variable selection method for the identification of epistatic models.

Holzinger ER, Szymczak S, Dasgupta A, Malley J, Li Q, Bailey-Wilson JE. Holzinger ER, et al. Pac Symp Biocomput. 2015;20:195-206. Pac Symp Biocomput. 2015. PMID: 25592581 Free PMC article.

3

Comparison of parametric and machine methods for variable selection in simulated Genetic Analysis Workshop 19 data.

Holzinger ER, Szymczak S, Malley J, Pugh EW, Ling H, Griffith S, Zhang P, Li Q, Cropp CD, Bailey-Wilson JE. Holzinger ER, et al. BMC Proc. 2016 Oct 18;10(Suppl 7):147-152. doi: 10.1186/s12919-016-0021-1. eCollection 2016. BMC Proc. 2016. PMID: 27980627 Free PMC article.

4

Brief review of regression-based and machine learning methods in genetic epidemiology: the Genetic Analysis Workshop 17 experience.

Dasgupta A, Sun YV, König IR, Bailey-Wilson JE, Malley JD. Dasgupta A, et al. Among authors: malley jd. Genet Epidemiol. 2011;35 Suppl 1(Suppl 1):S5-11. doi: 10.1002/gepi.20642. Genet Epidemiol. 2011. PMID: 22128059 Free PMC article. Review.

5

r2VIM: A new variable selection method for random forests in genome-wide association studies.

Szymczak S, Holzinger E, Dasgupta A, Malley JD, Molloy AM, Mills JL, Brody LC, Stambolian D, Bailey-Wilson JE. Szymczak S, et al. Among authors: malley jd. BioData Min. 2016 Feb 1;9:7. doi: 10.1186/s13040-016-0087-3. eCollection 2016. BioData Min. 2016. PMID: 26839594 Free PMC article.

6

Evaluation of random forests performance for genome-wide association studies in the presence of interaction effects.

Kim Y, Wojciechowski R, Sung H, Mathias RA, Wang L, Klein AP, Lenroot RK, Malley J, Bailey-Wilson JE. Kim Y, et al. BMC Proc. 2009 Dec 15;3 Suppl 7(Suppl 7):S64. doi: 10.1186/1753-6561-3-s7-s64. BMC Proc. 2009. PMID: 20018058 Free PMC article.

7

A comprehensive method for genome scans.

Malley JD, Naiman DQ, Bailey-Wilson JE. Malley JD, et al. Hum Hered. 2002;54(4):174-85. doi: 10.1159/000070663. Hum Hered. 2002. PMID: 12771550

8

Performance of random forests and logic regression methods using mini-exome sequence data.

Kim Y, Li Q, Cropp CD, Sung H, Cai J, Simpson CL, Perry B, Dasgupta A, Malley JD, Wilson AF, Bailey-Wilson JE. Kim Y, et al. Among authors: malley jd. BMC Proc. 2011 Nov 29;5 Suppl 9(Suppl 9):S104. doi: 10.1186/1753-6561-5-S9-S104. BMC Proc. 2011. PMID: 22373484 Free PMC article.

9

Risk estimation using probability machines.

Dasgupta A, Szymczak S, Moore JH, Bailey-Wilson JE, Malley JD. Dasgupta A, et al. Among authors: malley jd. BioData Min. 2014 Mar 1;7(1):2. doi: 10.1186/1756-0381-7-2. BioData Min. 2014. PMID: 24581306 Free PMC article.

10

Importance sampling method of correction for multiple testing in affected sib-pair linkage analysis.

Klein AP, Kovac I, Sorant AJ, Baffoe-Bonnie A, Doan BQ, Ibay G, Lockwood E, Mandal D, Santhosh L, Weissbecker K, Woo J, Zambelli-Weiner A, Zhang J, Naiman DQ, Malley J, Bailey-Wilson JE. Klein AP, et al. BMC Genet. 2003 Dec 31;4 Suppl 1(Suppl 1):S73. doi: 10.1186/1471-2156-4-S1-S73. BMC Genet. 2003. PMID: 14975141 Free PMC article.

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