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Lessons Learned: the Importance of Biological Curation.
Fountain JC, Clevenger JP, Vaughn JN, Guo B. Fountain JC, et al. Among authors: clevenger jp. Microbiol Resour Announc. 2021 Dec 2;10(48):e0047321. doi: 10.1128/MRA.00473-21. Epub 2021 Dec 2. Microbiol Resour Announc. 2021. PMID: 34854709 Free PMC article. No abstract available.
The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut.
Bertioli DJ, Cannon SB, Froenicke L, Huang G, Farmer AD, Cannon EK, Liu X, Gao D, Clevenger J, Dash S, Ren L, Moretzsohn MC, Shirasawa K, Huang W, Vidigal B, Abernathy B, Chu Y, Niederhuth CE, Umale P, Araújo AC, Kozik A, Kim KD, Burow MD, Varshney RK, Wang X, Zhang X, Barkley N, Guimarães PM, Isobe S, Guo B, Liao B, Stalker HT, Schmitz RJ, Scheffler BE, Leal-Bertioli SC, Xun X, Jackson SA, Michelmore R, Ozias-Akins P. Bertioli DJ, et al. Nat Genet. 2016 Apr;48(4):438-46. doi: 10.1038/ng.3517. Epub 2016 Feb 22. Nat Genet. 2016. PMID: 26901068 Free article.
Genome-wide SNP Genotyping Resolves Signatures of Selection and Tetrasomic Recombination in Peanut.
Clevenger J, Chu Y, Chavarro C, Agarwal G, Bertioli DJ, Leal-Bertioli SCM, Pandey MK, Vaughn J, Abernathy B, Barkley NA, Hovav R, Burow M, Nayak SN, Chitikineni A, Isleib TG, Holbrook CC, Jackson SA, Varshney RK, Ozias-Akins P. Clevenger J, et al. Mol Plant. 2017 Feb 13;10(2):309-322. doi: 10.1016/j.molp.2016.11.015. Epub 2016 Dec 18. Mol Plant. 2017. PMID: 27993622 Free PMC article.
Development and Evaluation of a High Density Genotyping 'Axiom_Arachis' Array with 58 K SNPs for Accelerating Genetics and Breeding in Groundnut.
Pandey MK, Agarwal G, Kale SM, Clevenger J, Nayak SN, Sriswathi M, Chitikineni A, Chavarro C, Chen X, Upadhyaya HD, Vishwakarma MK, Leal-Bertioli S, Liang X, Bertioli DJ, Guo B, Jackson SA, Ozias-Akins P, Varshney RK. Pandey MK, et al. Sci Rep. 2017 Jan 16;7:40577. doi: 10.1038/srep40577. Sci Rep. 2017. PMID: 28091575 Free PMC article.
High-density genetic map using whole-genome resequencing for fine mapping and candidate gene discovery for disease resistance in peanut.
Agarwal G, Clevenger J, Pandey MK, Wang H, Shasidhar Y, Chu Y, Fountain JC, Choudhary D, Culbreath AK, Liu X, Huang G, Wang X, Deshmukh R, Holbrook CC, Bertioli DJ, Ozias-Akins P, Jackson SA, Varshney RK, Guo B. Agarwal G, et al. Plant Biotechnol J. 2018 Nov;16(11):1954-1967. doi: 10.1111/pbi.12930. Epub 2018 May 15. Plant Biotechnol J. 2018. PMID: 29637729 Free PMC article.
The genome sequence of segmental allotetraploid peanut Arachis hypogaea.
Bertioli DJ, Jenkins J, Clevenger J, Dudchenko O, Gao D, Seijo G, Leal-Bertioli SCM, Ren L, Farmer AD, Pandey MK, Samoluk SS, Abernathy B, Agarwal G, Ballén-Taborda C, Cameron C, Campbell J, Chavarro C, Chitikineni A, Chu Y, Dash S, El Baidouri M, Guo B, Huang W, Kim KD, Korani W, Lanciano S, Lui CG, Mirouze M, Moretzsohn MC, Pham M, Shin JH, Shirasawa K, Sinharoy S, Sreedasyam A, Weeks NT, Zhang X, Zheng Z, Sun Z, Froenicke L, Aiden EL, Michelmore R, Varshney RK, Holbrook CC, Cannon EKS, Scheffler BE, Grimwood J, Ozias-Akins P, Cannon SB, Jackson SA, Schmutz J. Bertioli DJ, et al. Nat Genet. 2019 May;51(5):877-884. doi: 10.1038/s41588-019-0405-z. Epub 2019 May 1. Nat Genet. 2019. PMID: 31043755
Two New Aspergillus flavus Reference Genomes Reveal a Large Insertion Potentially Contributing to Isolate Stress Tolerance and Aflatoxin Production.
Fountain JC, Clevenger JP, Nadon B, Youngblood RC, Korani W, Chang PK, Starr D, Wang H, Isett B, Johnston HR, Wiggins R, Agarwal G, Chu Y, Kemerait RC, Pandey MK, Bhatnagar D, Ozias-Akins P, Varshney RK, Scheffler BE, Vaughn JN, Guo B. Fountain JC, et al. Among authors: clevenger jp. G3 (Bethesda). 2020 Oct 5;10(10):3515-3531. doi: 10.1534/g3.120.401405. G3 (Bethesda). 2020. PMID: 32817124 Free PMC article.
43 results