Abyzov A - Search Results

1

CNVpytor: a tool for copy number variation detection and analysis from read depth and allele imbalance in whole-genome sequencing.

Suvakov M, Panda A, Diesh C, Holmes I, Abyzov A. Suvakov M, et al. Among authors: abyzov a. Gigascience. 2021 Nov 18;10(11):giab074. doi: 10.1093/gigascience/giab074. Gigascience. 2021. PMID: 34817058 Free PMC article.

2

VarSim: a high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications.

Mu JC, Mohiyuddin M, Li J, Bani Asadi N, Gerstein MB, Abyzov A, Wong WH, Lam HY. Mu JC, et al. Among authors: abyzov a. Bioinformatics. 2015 May 1;31(9):1469-71. doi: 10.1093/bioinformatics/btu828. Epub 2014 Dec 17. Bioinformatics. 2015. PMID: 25524895 Free PMC article.

3

MetaSV: an accurate and integrative structural-variant caller for next generation sequencing.

Mohiyuddin M, Mu JC, Li J, Bani Asadi N, Gerstein MB, Abyzov A, Wong WH, Lam HY. Mohiyuddin M, et al. Among authors: abyzov a. Bioinformatics. 2015 Aug 15;31(16):2741-4. doi: 10.1093/bioinformatics/btv204. Epub 2015 Apr 10. Bioinformatics. 2015. PMID: 25861968 Free PMC article.

4

Elevated variant density around SV breakpoints in germline lineage lends support to error-prone replication hypothesis.

Dhokarh D, Abyzov A. Dhokarh D, et al. Among authors: abyzov a. Genome Res. 2016 Jul;26(7):874-81. doi: 10.1101/gr.205484.116. Epub 2016 May 23. Genome Res. 2016. PMID: 27216746 Free PMC article.

5

Comprehensive performance comparison of high-resolution array platforms for genome-wide Copy Number Variation (CNV) analysis in humans.

Haraksingh RR, Abyzov A, Urban AE. Haraksingh RR, et al. Among authors: abyzov a. BMC Genomics. 2017 Apr 24;18(1):321. doi: 10.1186/s12864-017-3658-x. BMC Genomics. 2017. PMID: 28438122 Free PMC article.

6

Detection and Quantification of Mosaic Genomic DNA Variation in Primary Somatic Tissues Using ddPCR: Analysis of Mosaic Transposable-Element Insertions, Copy-Number Variants, and Single-Nucleotide Variants.

Zhou B, Haney MS, Zhu X, Pattni R, Abyzov A, Urban AE. Zhou B, et al. Among authors: abyzov a. Methods Mol Biol. 2018;1768:173-190. doi: 10.1007/978-1-4939-7778-9_11. Methods Mol Biol. 2018. PMID: 29717444

7

Comprehensive, integrated, and phased whole-genome analysis of the primary ENCODE cell line K562.

Zhou B, Ho SS, Greer SU, Zhu X, Bell JM, Arthur JG, Spies N, Zhang X, Byeon S, Pattni R, Ben-Efraim N, Haney MS, Haraksingh RR, Song G, Ji HP, Perrin D, Wong WH, Abyzov A, Urban AE. Zhou B, et al. Among authors: abyzov a. Genome Res. 2019 Mar;29(3):472-484. doi: 10.1101/gr.234948.118. Epub 2019 Feb 8. Genome Res. 2019. PMID: 30737237 Free PMC article.

8

Haplotype-resolved and integrated genome analysis of the cancer cell line HepG2.

Zhou B, Ho SS, Greer SU, Spies N, Bell JM, Zhang X, Zhu X, Arthur JG, Byeon S, Pattni R, Saha I, Huang Y, Song G, Perrin D, Wong WH, Ji HP, Abyzov A, Urban AE. Zhou B, et al. Among authors: abyzov a. Nucleic Acids Res. 2019 May 7;47(8):3846-3861. doi: 10.1093/nar/gkz169. Nucleic Acids Res. 2019. PMID: 30864654 Free PMC article.

9

LongAGE: defining breakpoints of genomic structural variants through optimal and memory efficient alignments of long reads.

Tran Q, Abyzov A. Tran Q, et al. Among authors: abyzov a. Bioinformatics. 2021 May 17;37(7):1015-1017. doi: 10.1093/bioinformatics/btaa703. Bioinformatics. 2021. PMID: 32777815 Free PMC article.

10

SCELLECTOR: ranking amplification bias in single cells using shallow sequencing.

Sarangi V, Jourdon A, Bae T, Panda A, Vaccarino F, Abyzov A. Sarangi V, et al. Among authors: abyzov a. BMC Bioinformatics. 2020 Nov 12;21(1):521. doi: 10.1186/s12859-020-03858-y. BMC Bioinformatics. 2020. PMID: 33183232 Free PMC article.

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