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SARS-CoV-2 Epidemiology on a Public University Campus in Washington State.
Weil AA, Sohlberg SL, O'Hanlon JA, Casto AM, Emanuels AW, Lo NK, Greismer EP, Magedson AM, Wilcox NC, Kim AE, Back L, Frazar CD, Pelle B, Sibley TR, Ilcisin M, Lee J, Ryke EL, Craft JC, Schwabe-Fry KM, Fay KA, Cho S, Han PD, Heidl SJ, Pfau BA, Truong M, Zhong W, Srivatsan SR, Harb KF, Gottlieb GS, Hughes JP, Nickerson DA, Lockwood CM, Starita LM, Bedford T, Shendure JA, Chu HY. Weil AA, et al. Among authors: srivatsan sr. Open Forum Infect Dis. 2021 Sep 17;8(11):ofab464. doi: 10.1093/ofid/ofab464. eCollection 2021 Nov. Open Forum Infect Dis. 2021. PMID: 34805425 Free PMC article.
SwabExpress: An end-to-end protocol for extraction-free COVID-19 testing.
Srivatsan S, Heidl S, Pfau B, Martin BK, Han PD, Zhong W, van Raay K, McDermot E, Opsahl J, Gamboa L, Smith N, Truong M, Cho S, Barrow KA, Rich LM, Stone J, Wolf CR, McCulloch DJ, Kim AE, Brandstetter E, Sohlberg SL, Ilcisin M, Geyer RE, Chen W, Gehring J; Seattle Flu Study Investigators; Kosuri S, Bedford T, Rieder MJ, Nickerson DA, Chu HY, Konnick EQ, Debley JS, Shendure J, Lockwood CM, Starita LM. Srivatsan S, et al. bioRxiv [Preprint]. 2021 Apr 29:2020.04.22.056283. doi: 10.1101/2020.04.22.056283. bioRxiv. 2021. PMID: 32511368 Free PMC article. Updated. Preprint.
SwabExpress: An End-to-End Protocol for Extraction-Free COVID-19 Testing.
Srivatsan S, Heidl S, Pfau B, Martin BK, Han PD, Zhong W, van Raay K, McDermot E, Opsahl J, Gamboa L, Smith N, Truong M, Cho S, Barrow KA, Rich LM, Stone J, Wolf CR, McCulloch DJ, Kim AE, Brandstetter E, Sohlberg SL, Ilcisin M, Geyer RE, Chen W, Gehring J; Seattle Flu Study Investigators; Kosuri S, Bedford T, Rieder MJ, Nickerson DA, Chu HY, Konnick EQ, Debley JS, Shendure J, Lockwood CM, Starita LM. Srivatsan S, et al. Clin Chem. 2021 Dec 30;68(1):143-152. doi: 10.1093/clinchem/hvab132. Clin Chem. 2021. PMID: 34286830 Free PMC article.
Optimized single-nucleus transcriptional profiling by combinatorial indexing.
Martin BK, Qiu C, Nichols E, Phung M, Green-Gladden R, Srivatsan S, Blecher-Gonen R, Beliveau BJ, Trapnell C, Cao J, Shendure J. Martin BK, et al. Nat Protoc. 2023 Jan;18(1):188-207. doi: 10.1038/s41596-022-00752-0. Epub 2022 Oct 19. Nat Protoc. 2023. PMID: 36261634 Free PMC article. Review.
Embryo-scale, single-cell spatial transcriptomics.
Srivatsan SR, Regier MC, Barkan E, Franks JM, Packer JS, Grosjean P, Duran M, Saxton S, Ladd JJ, Spielmann M, Lois C, Lampe PD, Shendure J, Stevens KR, Trapnell C. Srivatsan SR, et al. Science. 2021 Jul 2;373(6550):111-117. doi: 10.1126/science.abb9536. Science. 2021. PMID: 34210887 Free PMC article.
Systematic reconstruction of cellular trajectories across mouse embryogenesis.
Qiu C, Cao J, Martin BK, Li T, Welsh IC, Srivatsan S, Huang X, Calderon D, Noble WS, Disteche CM, Murray SA, Spielmann M, Moens CB, Trapnell C, Shendure J. Qiu C, et al. Nat Genet. 2022 Mar;54(3):328-341. doi: 10.1038/s41588-022-01018-x. Epub 2022 Mar 14. Nat Genet. 2022. PMID: 35288709 Free PMC article.
Massively multiplex chemical transcriptomics at single-cell resolution.
Srivatsan SR, McFaline-Figueroa JL, Ramani V, Saunders L, Cao J, Packer J, Pliner HA, Jackson DL, Daza RM, Christiansen L, Zhang F, Steemers F, Shendure J, Trapnell C. Srivatsan SR, et al. Science. 2020 Jan 3;367(6473):45-51. doi: 10.1126/science.aax6234. Epub 2019 Dec 5. Science. 2020. PMID: 31806696 Free PMC article.
Genome sequencing in a case of Niemann-Pick type C.
Dougherty M, Lazar J, Klein JC, Diaz K, Gobillot T, Grunblatt E, Hasle N, Lawrence D, Maurano M, Nelson M, Olson G, Srivatsan S, Shendure J, Keene CD, Bird T, Horwitz MS, Marshall DA. Dougherty M, et al. Cold Spring Harb Mol Case Stud. 2016 Nov;2(6):a001222. doi: 10.1101/mcs.a001222. Cold Spring Harb Mol Case Stud. 2016. PMID: 27900365 Free PMC article.
30 results