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Bacterial genomic epidemiology with mixed samples.
Mäklin T, Kallonen T, Alanko J, Samuelsen Ø, Hegstad K, Mäkinen V, Corander J, Heinz E, Honkela A. Mäklin T, et al. Among authors: samuelsen o. Microb Genom. 2021 Nov;7(11):000691. doi: 10.1099/mgen.0.000691. Microb Genom. 2021. PMID: 34779765 Free PMC article.
The fight to keep resistance at bay, epidemiology of carbapenemase producing organisms (CPOs), vancomycin resistant enterococci (VRE) and methicillin resistant Staphylococcus aureus (MRSA) in Norway, 2006 - 2017.
Elstrøm P, Astrup E, Hegstad K, Samuelsen Ø, Enger H, Kacelnik O. Elstrøm P, et al. Among authors: samuelsen o. PLoS One. 2019 Feb 4;14(2):e0211741. doi: 10.1371/journal.pone.0211741. eCollection 2019. PLoS One. 2019. PMID: 30716133 Free PMC article.
Gastrointestinal carriage of Klebsiella pneumoniae in a general adult population: a cross-sectional study of risk factors and bacterial genomic diversity.
Raffelsberger N, Hetland MAK, Svendsen K, Småbrekke L, Löhr IH, Andreassen LLE, Brisse S, Holt KE, Sundsfjord A, Samuelsen Ø, Gravningen K. Raffelsberger N, et al. Among authors: samuelsen o. Gut Microbes. 2021 Jan-Dec;13(1):1939599. doi: 10.1080/19490976.2021.1939599. Gut Microbes. 2021. PMID: 34182896 Free PMC article.
Emergence and dissemination of antimicrobial resistance in Escherichia coli causing bloodstream infections in Norway in 2002-17: a nationwide, longitudinal, microbial population genomic study.
Gladstone RA, McNally A, Pöntinen AK, Tonkin-Hill G, Lees JA, Skytén K, Cléon F, Christensen MOK, Haldorsen BC, Bye KK, Gammelsrud KW, Hjetland R, Kümmel A, Larsen HE, Lindemann PC, Löhr IH, Marvik Å, Nilsen E, Noer MT, Simonsen GS, Steinbakk M, Tofteland S, Vattøy M, Bentley SD, Croucher NJ, Parkhill J, Johnsen PJ, Samuelsen Ø, Corander J. Gladstone RA, et al. Among authors: samuelsen o. Lancet Microbe. 2021 Jul;2(7):e331-e341. doi: 10.1016/S2666-5247(21)00031-8. Epub 2021 May 10. Lancet Microbe. 2021. PMID: 35544167 Free PMC article.
Strong pathogen competition in neonatal gut colonisation.
Mäklin T, Thorpe HA, Pöntinen AK, Gladstone RA, Shao Y, Pesonen M, McNally A, Johnsen PJ, Samuelsen Ø, Lawley TD, Honkela A, Corander J. Mäklin T, et al. Among authors: samuelsen o. Nat Commun. 2022 Dec 1;13(1):7417. doi: 10.1038/s41467-022-35178-5. Nat Commun. 2022. PMID: 36456554 Free PMC article.
Evolutionary and functional history of the Escherichia coli K1 capsule.
Arredondo-Alonso S, Blundell-Hunter G, Fu Z, Gladstone RA, Fillol-Salom A, Loraine J, Cloutman-Green E, Johnsen PJ, Samuelsen Ø, Pöntinen AK, Cléon F, Chavez-Bueno S, De la Cruz MA, Ares MA, Vongsouvath M, Chmielarczyk A, Horner C, Klein N, McNally A, Reis JN, Penadés JR, Thomson NR, Corander J, Taylor PW, McCarthy AJ. Arredondo-Alonso S, et al. Among authors: samuelsen o. Nat Commun. 2023 Jun 15;14(1):3294. doi: 10.1038/s41467-023-39052-w. Nat Commun. 2023. PMID: 37322051 Free PMC article.
Mge-cluster: a reference-free approach for typing bacterial plasmids.
Arredondo-Alonso S, Gladstone RA, Pöntinen AK, Gama JA, Schürch AC, Lanza VF, Johnsen PJ, Samuelsen Ø, Tonkin-Hill G, Corander J. Arredondo-Alonso S, et al. Among authors: samuelsen o. NAR Genom Bioinform. 2023 Jul 10;5(3):lqad066. doi: 10.1093/nargab/lqad066. eCollection 2023 Sep. NAR Genom Bioinform. 2023. PMID: 37435357 Free PMC article.
169 results