Corander J - Search Results

1

Bacterial genomic epidemiology with mixed samples.

Mäklin T, Kallonen T, Alanko J, Samuelsen Ø, Hegstad K, Mäkinen V, Corander J, Heinz E, Honkela A. Mäklin T, et al. Among authors: corander j. Microb Genom. 2021 Nov;7(11):000691. doi: 10.1099/mgen.0.000691. Microb Genom. 2021. PMID: 34779765 Free PMC article.

2

Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes.

Lees JA, Vehkala M, Välimäki N, Harris SR, Chewapreecha C, Croucher NJ, Marttinen P, Davies MR, Steer AC, Tong SY, Honkela A, Parkhill J, Bentley SD, Corander J. Lees JA, et al. Among authors: corander j. Nat Commun. 2016 Sep 16;7:12797. doi: 10.1038/ncomms12797. Nat Commun. 2016. PMID: 27633831 Free PMC article.

3

On the inconsistency of ℓ ₁-penalised sparse precision matrix estimation.

Heinävaara O, Leppä-Aho J, Corander J, Honkela A. Heinävaara O, et al. Among authors: corander j. BMC Bioinformatics. 2016 Dec 13;17(Suppl 16):448. doi: 10.1186/s12859-016-1309-x. BMC Bioinformatics. 2016. PMID: 28105909 Free PMC article.

4

Response to 'Refined analyses suggest that recombination is a minor source of genomic diversity in Pseudomonas aeruginosa chronic cystic fibrosis infections' by ).

Darch SE, McNally A, Corander J, Diggle SP. Darch SE, et al. Among authors: corander j. Microb Genom. 2016 Mar 2;2(3):e000054. doi: 10.1099/mgen.0.000054. eCollection 2016 Mar. Microb Genom. 2016. PMID: 28348849 Free PMC article. No abstract available.

5

Bayesian identification of bacterial strains from sequencing data.

Sankar A, Malone B, Bayliss SC, Pascoe B, Méric G, Hitchings MD, Sheppard SK, Feil EJ, Corander J, Honkela A. Sankar A, et al. Among authors: corander j. Microb Genom. 2016 Aug 25;2(8):e000075. doi: 10.1099/mgen.0.000075. eCollection 2016 Aug. Microb Genom. 2016. PMID: 28348870 Free PMC article.

6

Systematic longitudinal survey of invasive Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131.

Kallonen T, Brodrick HJ, Harris SR, Corander J, Brown NM, Martin V, Peacock SJ, Parkhill J. Kallonen T, et al. Among authors: corander j. Genome Res. 2017 Jul 18;27(8):1437-49. doi: 10.1101/gr.216606.116. Online ahead of print. Genome Res. 2017. PMID: 28720578 Free PMC article.

7

Phylogeographic separation and formation of sexually discrete lineages in a global population of Yersinia pseudotuberculosis.

Seecharran T, Kalin-Manttari L, Koskela K, Nikkari S, Dickins B, Corander J, Skurnik M, McNally A. Seecharran T, et al. Among authors: corander j. Microb Genom. 2017 Sep 18;3(10):e000133. doi: 10.1099/mgen.0.000133. eCollection 2017 Oct. Microb Genom. 2017. PMID: 29177091 Free PMC article.

8

Bacmeta: simulator for genomic evolution in bacterial metapopulations.

Sipola A, Marttinen P, Corander J. Sipola A, et al. Among authors: corander j. Bioinformatics. 2018 Jul 1;34(13):2308-2310. doi: 10.1093/bioinformatics/bty093. Bioinformatics. 2018. PMID: 29474733

9

SuperDCA for genome-wide epistasis analysis.

Puranen S, Pesonen M, Pensar J, Xu YY, Lees JA, Bentley SD, Croucher NJ, Corander J. Puranen S, et al. Among authors: corander j. Microb Genom. 2018 Jun;4(6):e000184. doi: 10.1099/mgen.0.000184. Epub 2018 May 29. Microb Genom. 2018. PMID: 29813016 Free PMC article.

10

Identifying Bacterial Strains from Sequencing Data.

Mäklin T, Corander J, Honkela A. Mäklin T, et al. Among authors: corander j. Methods Mol Biol. 2018;1807:1-7. doi: 10.1007/978-1-4939-8561-6_1. Methods Mol Biol. 2018. PMID: 30030799

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