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The gene regulation knowledge commons: the action area of GREEKC.
Kuiper M, Bonello J, Fernández-Breis JT, Bucher P, Futschik ME, Gaudet P, Kulakovskiy IV, Licata L, Logie C, Lovering RC, Makeev VJ, Orchard S, Panni S, Perfetto L, Sant D, Schulz S, Vercruysse S, Zerbino DR, Lægreid A; GRECO Consortium. Kuiper M, et al. Among authors: makeev vj. Biochim Biophys Acta Gene Regul Mech. 2022 Jan;1865(1):194768. doi: 10.1016/j.bbagrm.2021.194768. Epub 2021 Oct 30. Biochim Biophys Acta Gene Regul Mech. 2022. PMID: 34757206 Free article.
Zebrafish pigment cells develop directly from persistent highly multipotent progenitors.
Subkhankulova T, Camargo Sosa K, Uroshlev LA, Nikaido M, Shriever N, Kasianov AS, Yang X, Rodrigues FSLM, Carney TJ, Bavister G, Schwetlick H, Dawes JHP, Rocco A, Makeev VJ, Kelsh RN. Subkhankulova T, et al. Among authors: makeev vj. Nat Commun. 2023 Mar 6;14(1):1258. doi: 10.1038/s41467-023-36876-4. Nat Commun. 2023. PMID: 36878908 Free PMC article.
Empirical potentials for ion binding in proteins.
Rahmanov S, Kulakovskiy I, Uroshlev L, Makeev V. Rahmanov S, et al. J Bioinform Comput Biol. 2010 Jun;8(3):427-35. doi: 10.1142/s0219720010004641. J Bioinform Comput Biol. 2010. PMID: 20556854
Deep and wide digging for binding motifs in ChIP-Seq data.
Kulakovskiy IV, Boeva VA, Favorov AV, Makeev VJ. Kulakovskiy IV, et al. Among authors: makeev vj. Bioinformatics. 2010 Oct 15;26(20):2622-3. doi: 10.1093/bioinformatics/btq488. Epub 2010 Aug 24. Bioinformatics. 2010. PMID: 20736340
DNA sequence motif: a jack of all trades for ChIP-Seq data.
Kulakovskiy IV, Makeev VJ. Kulakovskiy IV, et al. Among authors: makeev vj. Adv Protein Chem Struct Biol. 2013;91:135-71. doi: 10.1016/B978-0-12-411637-5.00005-6. Adv Protein Chem Struct Biol. 2013. PMID: 23790213 Review.
80 results