Kuiper M - Search Results

1

The gene regulation knowledge commons: the action area of GREEKC.

Kuiper M, Bonello J, Fernández-Breis JT, Bucher P, Futschik ME, Gaudet P, Kulakovskiy IV, Licata L, Logie C, Lovering RC, Makeev VJ, Orchard S, Panni S, Perfetto L, Sant D, Schulz S, Vercruysse S, Zerbino DR, Lægreid A; GRECO Consortium. Kuiper M, et al. Biochim Biophys Acta Gene Regul Mech. 2022 Jan;1865(1):194768. doi: 10.1016/j.bbagrm.2021.194768. Epub 2021 Oct 30. Biochim Biophys Acta Gene Regul Mech. 2022. PMID: 34757206 Free article.

2

Simulating genetic networks made easy: network construction with simple building blocks.

Vercruysse S, Kuiper M. Vercruysse S, et al. Among authors: kuiper m. Bioinformatics. 2005 Jan 15;21(2):269-71. doi: 10.1093/bioinformatics/bth478. Epub 2004 Aug 19. Bioinformatics. 2005. PMID: 15319258

3

The cyclin-dependent kinase inhibitor KRP2 controls the onset of the endoreduplication cycle during Arabidopsis leaf development through inhibition of mitotic CDKA;1 kinase complexes.

Verkest A, Manes CL, Vercruysse S, Maes S, Van Der Schueren E, Beeckman T, Genschik P, Kuiper M, Inzé D, De Veylder L. Verkest A, et al. Among authors: kuiper m. Plant Cell. 2005 Jun;17(6):1723-36. doi: 10.1105/tpc.105.032383. Epub 2005 Apr 29. Plant Cell. 2005. PMID: 15863515 Free PMC article.

4

The Arabidopsis leaf as a model system for investigating the role of cell cycle regulation in organ growth.

Beemster GT, Vercruysse S, De Veylder L, Kuiper M, Inzé D. Beemster GT, et al. Among authors: kuiper m. J Plant Res. 2006 Jan;119(1):43-50. doi: 10.1007/s10265-005-0234-2. Epub 2005 Nov 15. J Plant Res. 2006. PMID: 16292465

5

OLSVis: an animated, interactive visual browser for bio-ontologies.

Vercruysse S, Venkatesan A, Kuiper M. Vercruysse S, et al. Among authors: kuiper m. BMC Bioinformatics. 2012 Jul 10;13:116. doi: 10.1186/1471-2105-13-116. BMC Bioinformatics. 2012. PMID: 22646023 Free PMC article.

6

Jointly creating digital abstracts: dealing with synonymy and polysemy.

Vercruysse S, Kuiper M. Vercruysse S, et al. Among authors: kuiper m. BMC Res Notes. 2012 Oct 30;5:601. doi: 10.1186/1756-0500-5-601. BMC Res Notes. 2012. PMID: 23110757 Free PMC article.

7

TFcheckpoint: a curated compendium of specific DNA-binding RNA polymerase II transcription factors.

Chawla K, Tripathi S, Thommesen L, Lægreid A, Kuiper M. Chawla K, et al. Among authors: kuiper m. Bioinformatics. 2013 Oct 1;29(19):2519-20. doi: 10.1093/bioinformatics/btt432. Epub 2013 Aug 9. Bioinformatics. 2013. PMID: 23933972

8

Gene Ontology annotation of sequence-specific DNA binding transcription factors: setting the stage for a large-scale curation effort.

Tripathi S, Christie KR, Balakrishnan R, Huntley R, Hill DP, Thommesen L, Blake JA, Kuiper M, Lægreid A. Tripathi S, et al. Among authors: kuiper m. Database (Oxford). 2013 Aug 27;2013:bat062. doi: 10.1093/database/bat062. Print 2013. Database (Oxford). 2013. PMID: 23981286 Free PMC article.

9

Finding gene regulatory network candidates using the gene expression knowledge base.

Venkatesan A, Tripathi S, Sanz de Galdeano A, Blondé W, Lægreid A, Mironov V, Kuiper M. Venkatesan A, et al. Among authors: kuiper m. BMC Bioinformatics. 2014 Dec 10;15(1):386. doi: 10.1186/s12859-014-0386-y. BMC Bioinformatics. 2014. PMID: 25490885 Free PMC article.

10

Gene regulation knowledge commons: community action takes care of DNA binding transcription factors.

Tripathi S, Vercruysse S, Chawla K, Christie KR, Blake JA, Huntley RP, Orchard S, Hermjakob H, Thommesen L, Lægreid A, Kuiper M. Tripathi S, et al. Among authors: kuiper m. Database (Oxford). 2016 Jun 5;2016:baw088. doi: 10.1093/database/baw088. Print 2016. Database (Oxford). 2016. PMID: 27270715 Free PMC article.

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