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Sustainable computational science: the ReScience initiative.
Rougier NP, Hinsen K, Alexandre F, Arildsen T, Barba LA, Benureau FCY, Brown CT, de Buyl P, Caglayan O, Davison AP, Delsuc MA, Detorakis G, Diem AK, Drix D, Enel P, Girard B, Guest O, Hall MG, Henriques RN, Hinaut X, Jaron KS, Khamassi M, Klein A, Manninen T, Marchesi P, McGlinn D, Metzner C, Petchey O, Plesser HE, Poisot T, Ram K, Ram Y, Roesch E, Rossant C, Rostami V, Shifman A, Stachelek J, Stimberg M, Stollmeier F, Vaggi F, Viejo G, Vitay J, Vostinar AE, Yurchak R, Zito T. Rougier NP, et al. Among authors: brown ct. PeerJ Comput Sci. 2017 Dec 18;3:e142. doi: 10.7717/peerj-cs.142. eCollection 2017. PeerJ Comput Sci. 2017. PMID: 34722870 Free PMC article.
How open science helps researchers succeed.
McKiernan EC, Bourne PE, Brown CT, Buck S, Kenall A, Lin J, McDougall D, Nosek BA, Ram K, Soderberg CK, Spies JR, Thaney K, Updegrove A, Woo KH, Yarkoni T. McKiernan EC, et al. Among authors: brown ct. Elife. 2016 Jul 7;5:e16800. doi: 10.7554/eLife.16800. Elife. 2016. PMID: 27387362 Free PMC article.
The principles of tomorrow's university.
Katz DS, Allen G, Barba LA, Berg DR, Bik H, Boettiger C, Borgman CL, Brown CT, Buck S, Burd R, de Waard A, Eve MP, Granger BE, Greenberg J, Howe A, Howe B, Khanna M, Killeen TL, Mayernik M, McKiernan E, Mentzel C, Merchant N, Niemeyer KE, Noren L, Nusser SM, Reed DA, Seidel E, Smith M, Spies JR, Turk M, Van Horn JD, Walsh J. Katz DS, et al. Among authors: brown ct. F1000Res. 2018 Dec 11;7:1926. doi: 10.12688/f1000research.17425.1. eCollection 2018. F1000Res. 2018. PMID: 30687499 Free PMC article.
Large-scale sequence comparisons with sourmash.
Pierce NT, Irber L, Reiter T, Brooks P, Brown CT. Pierce NT, et al. Among authors: brown ct. F1000Res. 2019 Jul 4;8:1006. doi: 10.12688/f1000research.19675.1. eCollection 2019. F1000Res. 2019. PMID: 31508216 Free PMC article.
Streamlining data-intensive biology with workflow systems.
Reiter T, Brooks PT, Irber L, Joslin SEK, Reid CM, Scott C, Brown CT, Pierce-Ward NT. Reiter T, et al. Among authors: brown ct. Gigascience. 2021 Jan 13;10(1):giaa140. doi: 10.1093/gigascience/giaa140. Gigascience. 2021. PMID: 33438730 Free PMC article.
Strain recovery from metagenomes.
Brown CT. Brown CT. Nat Biotechnol. 2015 Oct;33(10):1041-3. doi: 10.1038/nbt.3375. Nat Biotechnol. 2015. PMID: 26448087 No abstract available.
291 results