Ji Z - Search Results

1

Unannotated proteins expand the MHC-I-restricted immunopeptidome in cancer.

Ouspenskaia T, Law T, Clauser KR, Klaeger S, Sarkizova S, Aguet F, Li B, Christian E, Knisbacher BA, Le PM, Hartigan CR, Keshishian H, Apffel A, Oliveira G, Zhang W, Chen S, Chow YT, Ji Z, Jungreis I, Shukla SA, Justesen S, Bachireddy P, Kellis M, Getz G, Hacohen N, Keskin DB, Carr SA, Wu CJ, Regev A. Ouspenskaia T, et al. Among authors: ji z. Nat Biotechnol. 2022 Feb;40(2):209-217. doi: 10.1038/s41587-021-01021-3. Epub 2021 Oct 18. Nat Biotechnol. 2022. PMID: 34663921 Free PMC article.

2

Many lncRNAs, 5'UTRs, and pseudogenes are translated and some are likely to express functional proteins.

Ji Z, Song R, Regev A, Struhl K. Ji Z, et al. Elife. 2015 Dec 19;4:e08890. doi: 10.7554/eLife.08890. Elife. 2015. PMID: 26687005 Free PMC article.

3

Transcriptome-scale RNase-footprinting of RNA-protein complexes.

Ji Z, Song R, Huang H, Regev A, Struhl K. Ji Z, et al. Nat Biotechnol. 2016 Apr;34(4):410-3. doi: 10.1038/nbt.3441. Epub 2016 Feb 22. Nat Biotechnol. 2016. PMID: 26900662 Free PMC article.

4

Genome-scale identification of transcription factors that mediate an inflammatory network during breast cellular transformation.

Ji Z, He L, Rotem A, Janzer A, Cheng CS, Regev A, Struhl K. Ji Z, et al. Nat Commun. 2018 May 25;9(1):2068. doi: 10.1038/s41467-018-04406-2. Nat Commun. 2018. PMID: 29802342 Free PMC article.

5

Comprehensive comparative analysis of 5'-end RNA-sequencing methods.

Adiconis X, Haber AL, Simmons SK, Levy Moonshine A, Ji Z, Busby MA, Shi X, Jacques J, Lancaster MA, Pan JQ, Regev A, Levin JZ. Adiconis X, et al. Among authors: ji z. Nat Methods. 2018 Jul;15(7):505-511. doi: 10.1038/s41592-018-0014-2. Epub 2018 Jun 4. Nat Methods. 2018. PMID: 29867192 Free PMC article.

6

Author Correction: Comprehensive comparative analysis of 5'-end RNA-sequencing methods.

Adiconis X, Haber AL, Simmons SK, Moonshine AL, Ji Z, Busby MA, Shi X, Jacques J, Lancaster MA, Pan JQ, Regev A, Levin JZ. Adiconis X, et al. Among authors: ji z. Nat Methods. 2018 Dec;15(12):1126. doi: 10.1038/s41592-018-0237-2. Nat Methods. 2018. PMID: 30459407

7

Inflammatory regulatory network mediated by the joint action of NF-kB, STAT3, and AP-1 factors is involved in many human cancers.

Ji Z, He L, Regev A, Struhl K. Ji Z, et al. Proc Natl Acad Sci U S A. 2019 May 7;116(19):9453-9462. doi: 10.1073/pnas.1821068116. Epub 2019 Mar 25. Proc Natl Acad Sci U S A. 2019. PMID: 30910960 Free PMC article.

8

Noncanonical open reading frames encode functional proteins essential for cancer cell survival.

Prensner JR, Enache OM, Luria V, Krug K, Clauser KR, Dempster JM, Karger A, Wang L, Stumbraite K, Wang VM, Botta G, Lyons NJ, Goodale A, Kalani Z, Fritchman B, Brown A, Alan D, Green T, Yang X, Jaffe JD, Roth JA, Piccioni F, Kirschner MW, Ji Z, Root DE, Golub TR. Prensner JR, et al. Among authors: ji z. Nat Biotechnol. 2021 Jun;39(6):697-704. doi: 10.1038/s41587-020-00806-2. Epub 2021 Jan 28. Nat Biotechnol. 2021. PMID: 33510483 Free PMC article.

9

Widespread stable noncanonical peptides identified by integrated analyses of ribosome profiling and ORF features.

Yang H, Li Q, Stroup EK, Wang S, Ji Z. Yang H, et al. Among authors: ji z. Nat Commun. 2024 Mar 2;15(1):1932. doi: 10.1038/s41467-024-46240-9. Nat Commun. 2024. PMID: 38431639 Free PMC article.

10

LINC00520 is induced by Src, STAT3, and PI3K and plays a functional role in breast cancer.

Henry WS, Hendrickson DG, Beca F, Glass B, Lindahl-Allen M, He L, Ji Z, Struhl K, Beck AH, Rinn JL, Toker A. Henry WS, et al. Among authors: ji z. Oncotarget. 2016 Dec 13;7(50):81981-81994. doi: 10.18632/oncotarget.11962. Oncotarget. 2016. PMID: 27626181 Free PMC article.

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