Tennakoon C - Search Results

1

Single-cell analysis reveals androgen receptor regulates the ER-to-Golgi trafficking pathway with CREB3L2 to drive prostate cancer progression.

Hu L, Chen X, Narwade N, Lim MGL, Chen Z, Tennakoon C, Guan P, Chan UI, Zhao Z, Deng M, Xu X, Sung WK, Cheung E. Hu L, et al. Among authors: tennakoon c. Oncogene. 2021 Nov;40(47):6479-6493. doi: 10.1038/s41388-021-02026-7. Epub 2021 Oct 5. Oncogene. 2021. PMID: 34611310

2

Comprehensive analysis of transcriptome profiles in hepatocellular carcinoma.

Jin Y, Lee WY, Toh ST, Tennakoon C, Toh HC, Chow PK, Chung AY, Chong SS, Ooi LL, Sung WK, Lee CG. Jin Y, et al. Among authors: tennakoon c. J Transl Med. 2019 Aug 20;17(1):273. doi: 10.1186/s12967-019-2025-x. J Transl Med. 2019. PMID: 31429776 Free PMC article.

3

BatAlign: an incremental method for accurate alignment of sequencing reads.

Lim JQ, Tennakoon C, Guan P, Sung WK. Lim JQ, et al. Among authors: tennakoon c. Nucleic Acids Res. 2015 Sep 18;43(16):e107. doi: 10.1093/nar/gkv533. Epub 2015 Jul 13. Nucleic Acids Res. 2015. PMID: 26170239 Free PMC article.

4

BatMis: a fast algorithm for k-mismatch mapping.

Tennakoon C, Purbojati RW, Sung WK. Tennakoon C, et al. Bioinformatics. 2012 Aug 15;28(16):2122-8. doi: 10.1093/bioinformatics/bts339. Epub 2012 Jun 10. Bioinformatics. 2012. PMID: 22689389

5

ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing.

Li G, Fullwood MJ, Xu H, Mulawadi FH, Velkov S, Vega V, Ariyaratne PN, Mohamed YB, Ooi HS, Tennakoon C, Wei CL, Ruan Y, Sung WK. Li G, et al. Among authors: tennakoon c. Genome Biol. 2010;11(2):R22. doi: 10.1186/gb-2010-11-2-r22. Epub 2010 Feb 25. Genome Biol. 2010. PMID: 20181287 Free PMC article.

6

Platform comparison for evaluation of ALK protein immunohistochemical expression, genomic copy number and hotspot mutation status in neuroblastomas.

Yan B, Kuick CH, Lim M, Venkataraman K, Tennakoon C, Loh E, Lian D, Leong MY, Lakshmanan M, Tergaonkar V, Sung WK, Soh SY, Chang KT. Yan B, et al. Among authors: tennakoon c. PLoS One. 2014 Sep 4;9(9):e106575. doi: 10.1371/journal.pone.0106575. eCollection 2014. PLoS One. 2014. PMID: 25188507 Free PMC article.

7

BatMeth: improved mapper for bisulfite sequencing reads on DNA methylation.

Lim JQ, Tennakoon C, Li G, Wong E, Ruan Y, Wei CL, Sung WK. Lim JQ, et al. Among authors: tennakoon c. Genome Biol. 2012 Oct 3;13(10):R82. doi: 10.1186/gb-2012-13-10-r82. Genome Biol. 2012. PMID: 23034162 Free PMC article.

8

Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma.

Sung WK, Zheng H, Li S, Chen R, Liu X, Li Y, Lee NP, Lee WH, Ariyaratne PN, Tennakoon C, Mulawadi FH, Wong KF, Liu AM, Poon RT, Fan ST, Chan KL, Gong Z, Hu Y, Lin Z, Wang G, Zhang Q, Barber TD, Chou WC, Aggarwal A, Hao K, Zhou W, Zhang C, Hardwick J, Buser C, Xu J, Kan Z, Dai H, Mao M, Reinhard C, Wang J, Luk JM. Sung WK, et al. Among authors: tennakoon c. Nat Genet. 2012 May 27;44(7):765-9. doi: 10.1038/ng.2295. Nat Genet. 2012. PMID: 22634754

9

BATVI: Fast, sensitive and accurate detection of virus integrations.

Tennakoon C, Sung WK. Tennakoon C, et al. BMC Bioinformatics. 2017 Mar 14;18(Suppl 3):71. doi: 10.1186/s12859-017-1470-x. BMC Bioinformatics. 2017. PMID: 28361674 Free PMC article.

10

SiNPle: Fast and Sensitive Variant Calling for Deep Sequencing Data.

Ferretti L, Tennakoon C, Silesian A, Ribeca GFA. Ferretti L, et al. Among authors: tennakoon c. Genes (Basel). 2019 Jul 25;10(8):561. doi: 10.3390/genes10080561. Genes (Basel). 2019. PMID: 31349684 Free PMC article.

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