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Genetic and epigenetic coordination of cortical interneuron development.
Allaway KC, Gabitto MI, Wapinski O, Saldi G, Wang CY, Bandler RC, Wu SJ, Bonneau R, Fishell G. Allaway KC, et al. Among authors: bonneau r. Nature. 2021 Sep;597(7878):693-697. doi: 10.1038/s41586-021-03933-1. Epub 2021 Sep 22. Nature. 2021. PMID: 34552240 Free PMC article.
High-definition spatial transcriptomics for in situ tissue profiling.
Vickovic S, Eraslan G, Salmén F, Klughammer J, Stenbeck L, Schapiro D, Äijö T, Bonneau R, Bergenstråhle L, Navarro JF, Gould J, Griffin GK, Borg Å, Ronaghi M, Frisén J, Lundeberg J, Regev A, Ståhl PL. Vickovic S, et al. Among authors: bonneau r. Nat Methods. 2019 Oct;16(10):987-990. doi: 10.1038/s41592-019-0548-y. Epub 2019 Sep 9. Nat Methods. 2019. PMID: 31501547 Free PMC article.
Structure-based protein function prediction using graph convolutional networks.
Gligorijević V, Renfrew PD, Kosciolek T, Leman JK, Berenberg D, Vatanen T, Chandler C, Taylor BC, Fisk IM, Vlamakis H, Xavier RJ, Knight R, Cho K, Bonneau R. Gligorijević V, et al. Among authors: bonneau r. Nat Commun. 2021 May 26;12(1):3168. doi: 10.1038/s41467-021-23303-9. Nat Commun. 2021. PMID: 34039967 Free PMC article.
GABA-receptive microglia selectively sculpt developing inhibitory circuits.
Favuzzi E, Huang S, Saldi GA, Binan L, Ibrahim LA, Fernández-Otero M, Cao Y, Zeine A, Sefah A, Zheng K, Xu Q, Khlestova E, Farhi SL, Bonneau R, Datta SR, Stevens B, Fishell G. Favuzzi E, et al. Among authors: bonneau r. Cell. 2021 Jul 22;184(15):4048-4063.e32. doi: 10.1016/j.cell.2021.06.018. Epub 2021 Jul 6. Cell. 2021. PMID: 34233165 Free PMC article.
GABA-receptive microglia selectively sculpt developing inhibitory circuits.
Favuzzi E, Huang S, Saldi GA, Binan L, Ibrahim LA, Fernández-Otero M, Cao Y, Zeine A, Sefah A, Zheng K, Xu Q, Khlestova E, Farhi SL, Bonneau R, Datta SR, Stevens B, Fishell G. Favuzzi E, et al. Among authors: bonneau r. Cell. 2021 Oct 28;184(22):5686. doi: 10.1016/j.cell.2021.10.009. Cell. 2021. PMID: 34715023 Free PMC article. No abstract available.
Wisdom of crowds for robust gene network inference.
Marbach D, Costello JC, Küffner R, Vega NM, Prill RJ, Camacho DM, Allison KR; DREAM5 Consortium; Kellis M, Collins JJ, Stolovitzky G. Marbach D, et al. Nat Methods. 2012 Jul 15;9(8):796-804. doi: 10.1038/nmeth.2016. Nat Methods. 2012. PMID: 22796662 Free PMC article.
An experimentally supported model of the Bacillus subtilis global transcriptional regulatory network.
Arrieta-Ortiz ML, Hafemeister C, Bate AR, Chu T, Greenfield A, Shuster B, Barry SN, Gallitto M, Liu B, Kacmarczyk T, Santoriello F, Chen J, Rodrigues CD, Sato T, Rudner DZ, Driks A, Bonneau R, Eichenberger P. Arrieta-Ortiz ML, et al. Among authors: bonneau r. Mol Syst Biol. 2015 Nov 17;11(11):839. doi: 10.15252/msb.20156236. Mol Syst Biol. 2015. PMID: 26577401 Free PMC article.
323 results