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Benchmarking immunoinformatic tools for the analysis of antibody repertoire sequences.
Smakaj E, Babrak L, Ohlin M, Shugay M, Briney B, Tosoni D, Galli C, Grobelsek V, D'Angelo I, Olson B, Reddy S, Greiff V, Trück J, Marquez S, Lees W, Miho E. Smakaj E, et al. Among authors: greiff v. Bioinformatics. 2020 Mar 1;36(6):1731-1739. doi: 10.1093/bioinformatics/btz845. Bioinformatics. 2020. PMID: 31873728 Free PMC article.
immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking.
Weber CR, Akbar R, Yermanos A, Pavlović M, Snapkov I, Sandve GK, Reddy ST, Greiff V. Weber CR, et al. Among authors: greiff v. Bioinformatics. 2020 Jun 1;36(11):3594-3596. doi: 10.1093/bioinformatics/btaa158. Bioinformatics. 2020. PMID: 32154832 Free PMC article.
Therefore, we developed immuneSIM, an R package that allows the simulation of native-like and aberrant synthetic full-length variable region immune receptor sequences by tuning the following immune receptor features: (i) species and chain type (BCR, TCR, single and paired), (ii) …
Therefore, we developed immuneSIM, an R package that allows the simulation of native-like and aberrant synthetic full-length variable region …
The Future of Blood Testing Is the Immunome.
Arnaout RA, Prak ETL, Schwab N, Rubelt F; Adaptive Immune Receptor Repertoire Community. Arnaout RA, et al. Front Immunol. 2021 Mar 15;12:626793. doi: 10.3389/fimmu.2021.626793. eCollection 2021. Front Immunol. 2021. PMID: 33790897 Free PMC article.
TCR repertoire diversity in Multiple Sclerosis: High-dimensional bioinformatics analysis of sequences from brain, cerebrospinal fluid and peripheral blood.
Amoriello R, Chernigovskaya M, Greiff V, Carnasciali A, Massacesi L, Barilaro A, Repice AM, Biagioli T, Aldinucci A, Muraro PA, Laplaud DA, Lossius A, Ballerini C. Amoriello R, et al. Among authors: greiff v. EBioMedicine. 2021 Jun;68:103429. doi: 10.1016/j.ebiom.2021.103429. Epub 2021 Jun 11. EBioMedicine. 2021. PMID: 34127432 Free PMC article.
88 results