Kandathil SM - Search Results

1

A guide to machine learning for biologists.

Greener JG, Kandathil SM, Moffat L, Jones DT. Greener JG, et al. Among authors: kandathil sm. Nat Rev Mol Cell Biol. 2022 Jan;23(1):40-55. doi: 10.1038/s41580-021-00407-0. Epub 2021 Sep 13. Nat Rev Mol Cell Biol. 2022. PMID: 34518686 Review.

2

High precision in protein contact prediction using fully convolutional neural networks and minimal sequence features.

Jones DT, Kandathil SM. Jones DT, et al. Among authors: kandathil sm. Bioinformatics. 2018 Oct 1;34(19):3308-3315. doi: 10.1093/bioinformatics/bty341. Bioinformatics. 2018. PMID: 29718112 Free PMC article.

3

Prediction of interresidue contacts with DeepMetaPSICOV in CASP13.

Kandathil SM, Greener JG, Jones DT. Kandathil SM, et al. Proteins. 2019 Dec;87(12):1092-1099. doi: 10.1002/prot.25779. Epub 2019 Jul 27. Proteins. 2019. PMID: 31298436 Free PMC article.

4

Deep learning extends de novo protein modelling coverage of genomes using iteratively predicted structural constraints.

Greener JG, Kandathil SM, Jones DT. Greener JG, et al. Among authors: kandathil sm. Nat Commun. 2019 Sep 4;10(1):3977. doi: 10.1038/s41467-019-11994-0. Nat Commun. 2019. PMID: 31484923 Free PMC article.

5

Recent developments in deep learning applied to protein structure prediction.

Kandathil SM, Greener JG, Jones DT. Kandathil SM, et al. Proteins. 2019 Dec;87(12):1179-1189. doi: 10.1002/prot.25824. Epub 2019 Oct 14. Proteins. 2019. PMID: 31589782 Free PMC article.

6

Ultrafast end-to-end protein structure prediction enables high-throughput exploration of uncharacterized proteins.

Kandathil SM, Greener JG, Lau AM, Jones DT. Kandathil SM, et al. Proc Natl Acad Sci U S A. 2022 Jan 25;119(4):e2113348119. doi: 10.1073/pnas.2113348119. Proc Natl Acad Sci U S A. 2022. PMID: 35074909 Free PMC article.

7

Machine learning methods for predicting protein structure from single sequences.

Kandathil SM, Lau AM, Jones DT. Kandathil SM, et al. Curr Opin Struct Biol. 2023 Aug;81:102627. doi: 10.1016/j.sbi.2023.102627. Epub 2023 Jun 13. Curr Opin Struct Biol. 2023. PMID: 37320955 Free article. Review.

8

Merizo: a rapid and accurate protein domain segmentation method using invariant point attention.

Lau AM, Kandathil SM, Jones DT. Lau AM, et al. Among authors: kandathil sm. Nat Commun. 2023 Dec 19;14(1):8445. doi: 10.1038/s41467-023-43934-4. Nat Commun. 2023. PMID: 38114456 Free PMC article.

9

Deep learning for the PSIPRED Protein Analysis Workbench.

Buchan DWA, Moffat L, Lau A, Kandathil SM, Jones DT. Buchan DWA, et al. Among authors: kandathil sm. Nucleic Acids Res. 2024 May 15:gkae328. doi: 10.1093/nar/gkae328. Online ahead of print. Nucleic Acids Res. 2024. PMID: 38747351

10

Toward a detailed understanding of search trajectories in fragment assembly approaches to protein structure prediction.

Kandathil SM, Handl J, Lovell SC. Kandathil SM, et al. Proteins. 2016 Apr;84(4):411-26. doi: 10.1002/prot.24987. Epub 2016 Feb 23. Proteins. 2016. PMID: 26799916 Free PMC article.

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