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A statistical model for describing and simulating microbial community profiles.
Ma S, Ren B, Mallick H, Moon YS, Schwager E, Maharjan S, Tickle TL, Lu Y, Carmody RN, Franzosa EA, Janson L, Huttenhower C. Ma S, et al. Among authors: huttenhower c. PLoS Comput Biol. 2021 Sep 13;17(9):e1008913. doi: 10.1371/journal.pcbi.1008913. eCollection 2021 Sep. PLoS Comput Biol. 2021. PMID: 34516542 Free PMC article.
Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment.
Morgan XC, Tickle TL, Sokol H, Gevers D, Devaney KL, Ward DV, Reyes JA, Shah SA, LeLeiko N, Snapper SB, Bousvaros A, Korzenik J, Sands BE, Xavier RJ, Huttenhower C. Morgan XC, et al. Among authors: huttenhower c. Genome Biol. 2012 Apr 16;13(9):R79. doi: 10.1186/gb-2012-13-9-r79. Genome Biol. 2012. PMID: 23013615 Free PMC article.
Computational meta'omics for microbial community studies.
Segata N, Boernigen D, Tickle TL, Morgan XC, Garrett WS, Huttenhower C. Segata N, et al. Among authors: huttenhower c. Mol Syst Biol. 2013 May 14;9:666. doi: 10.1038/msb.2013.22. Mol Syst Biol. 2013. PMID: 23670539 Free PMC article. Review.
Two-stage microbial community experimental design.
Tickle TL, Segata N, Waldron L, Weingart U, Huttenhower C. Tickle TL, et al. Among authors: huttenhower c. ISME J. 2013 Dec;7(12):2330-9. doi: 10.1038/ismej.2013.139. Epub 2013 Aug 15. ISME J. 2013. PMID: 23949665 Free PMC article.
Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission.
Rooks MG, Veiga P, Wardwell-Scott LH, Tickle T, Segata N, Michaud M, Gallini CA, Beal C, van Hylckama-Vlieg JE, Ballal SA, Morgan XC, Glickman JN, Gevers D, Huttenhower C, Garrett WS. Rooks MG, et al. Among authors: huttenhower c. ISME J. 2014 Jul;8(7):1403-17. doi: 10.1038/ismej.2014.3. Epub 2014 Feb 6. ISME J. 2014. PMID: 24500617 Free PMC article.
The treatment-naive microbiome in new-onset Crohn's disease.
Gevers D, Kugathasan S, Denson LA, Vázquez-Baeza Y, Van Treuren W, Ren B, Schwager E, Knights D, Song SJ, Yassour M, Morgan XC, Kostic AD, Luo C, González A, McDonald D, Haberman Y, Walters T, Baker S, Rosh J, Stephens M, Heyman M, Markowitz J, Baldassano R, Griffiths A, Sylvester F, Mack D, Kim S, Crandall W, Hyams J, Huttenhower C, Knight R, Xavier RJ. Gevers D, et al. Among authors: huttenhower c. Cell Host Microbe. 2014 Mar 12;15(3):382-392. doi: 10.1016/j.chom.2014.02.005. Cell Host Microbe. 2014. PMID: 24629344 Free PMC article.
Reprograming of gut microbiome energy metabolism by the FUT2 Crohn's disease risk polymorphism.
Tong M, McHardy I, Ruegger P, Goudarzi M, Kashyap PC, Haritunians T, Li X, Graeber TG, Schwager E, Huttenhower C, Fornace AJ Jr, Sonnenburg JL, McGovern DP, Borneman J, Braun J. Tong M, et al. Among authors: huttenhower c. ISME J. 2014 Nov;8(11):2193-206. doi: 10.1038/ismej.2014.64. Epub 2014 Apr 29. ISME J. 2014. PMID: 24781901 Free PMC article.
Relating the metatranscriptome and metagenome of the human gut.
Franzosa EA, Morgan XC, Segata N, Waldron L, Reyes J, Earl AM, Giannoukos G, Boylan MR, Ciulla D, Gevers D, Izard J, Garrett WS, Chan AT, Huttenhower C. Franzosa EA, et al. Among authors: huttenhower c. Proc Natl Acad Sci U S A. 2014 Jun 3;111(22):E2329-38. doi: 10.1073/pnas.1319284111. Epub 2014 May 19. Proc Natl Acad Sci U S A. 2014. PMID: 24843156 Free PMC article.
Advancing the microbiome research community.
Huttenhower C, Knight R, Brown CT, Caporaso JG, Clemente JC, Gevers D, Franzosa EA, Kelley ST, Knights D, Ley RE, Mahurkar A, Ravel J; Scientists for Advancement of Microbiome Research; White O. Huttenhower C, et al. Cell. 2014 Oct 9;159(2):227-30. doi: 10.1016/j.cell.2014.09.022. Cell. 2014. PMID: 25303518 Free PMC article.
303 results