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Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset?
Schilling KG, Rheault F, Petit L, Hansen CB, Nath V, Yeh FC, Girard G, Barakovic M, Rafael-Patino J, Yu T, Fischi-Gomez E, Pizzolato M, Ocampo-Pineda M, Schiavi S, Canales-Rodríguez EJ, Daducci A, Granziera C, Innocenti G, Thiran JP, Mancini L, Wastling S, Cocozza S, Petracca M, Pontillo G, Mancini M, Vos SB, Vakharia VN, Duncan JS, Melero H, Manzanedo L, Sanz-Morales E, Peña-Melián Á, Calamante F, Attyé A, Cabeen RP, Korobova L, Toga AW, Vijayakumari AA, Parker D, Verma R, Radwan A, Sunaert S, Emsell L, De Luca A, Leemans A, Bajada CJ, Haroon H, Azadbakht H, Chamberland M, Genc S, Tax CMW, Yeh PH, Srikanchana R, Mcknight CD, Yang JY, Chen J, Kelly CE, Yeh CH, Cochereau J, Maller JJ, Welton T, Almairac F, Seunarine KK, Clark CA, Zhang F, Makris N, Golby A, Rathi Y, O'Donnell LJ, Xia Y, Aydogan DB, Shi Y, Fernandes FG, Raemaekers M, Warrington S, Michielse S, Ramírez-Manzanares A, Concha L, Aranda R, Meraz MR, Lerma-Usabiaga G, Roitman L, Fekonja LS, Calarco N, Joseph M, Nakua H, Voineskos AN, Karan P, Grenier G, Legarreta JH, Adluru N, Nair VA, Prabhakaran V, Alexander AL, Kamagata K, Saito Y, Uchida W, Andica C, Abe M, Bayrak RG, Wheeler-Kingshott CAMG, D'Angelo E, Palesi … See abstract for full author list ➔ Schilling KG, et al. Among authors: bayrak rg. Neuroimage. 2021 Nov;243:118502. doi: 10.1016/j.neuroimage.2021.118502. Epub 2021 Aug 22. Neuroimage. 2021. PMID: 34433094 Free PMC article.
TractEM: Evaluation of protocols for deterministic tractography white matter atlas.
Rheault F, Bayrak RG, Wang X, Schilling KG, Greer JM, Hansen CB, Kerley C, Ramadass K, Remedios LW, Blaber JA, Williams O, Beason-Held LL, Resnick SM, Rogers BP, Landman BA. Rheault F, et al. Among authors: bayrak rg. Magn Reson Imaging. 2022 Jan;85:44-56. doi: 10.1016/j.mri.2021.10.017. Epub 2021 Oct 16. Magn Reson Imaging. 2022. PMID: 34666161 Free PMC article.
Characterization and correlation of signal drift in diffusion weighted MRI.
Hansen CB, Nath V, Hainline AE, Schilling KG, Parvathaneni P, Bayrak RG, Blaber JA, Irfanoglu O, Pierpaoli C, Anderson AW, Rogers BP, Landman BA. Hansen CB, et al. Among authors: bayrak rg. Magn Reson Imaging. 2019 Apr;57:133-142. doi: 10.1016/j.mri.2018.11.009. Epub 2018 Nov 22. Magn Reson Imaging. 2019. PMID: 30468766 Free PMC article.
LEARNING 3D WHITE MATTER MICROSTRUCTURE FROM 2D HISTOLOGY.
Nath V, Schilling KG, Remedios S, Bayrak RG, Gao Y, Blaber JA, Huo Y, Landman BA, Anderson AW. Nath V, et al. Among authors: bayrak rg. Proc IEEE Int Symp Biomed Imaging. 2019 Apr;2019:186-190. doi: 10.1109/isbi.2019.8759388. Epub 2019 Jul 11. Proc IEEE Int Symp Biomed Imaging. 2019. PMID: 32211122 Free PMC article.
Consideration of Cerebrospinal Fluid Intensity Variation in Diffusion Weighted MRI.
Hansen CB, Nath V, Hainline AE, Schilling KG, Parvathaneni P, Bayrak RG, Blaber JA, Williams O, Resnick S, Beason-Held L, Irfanoglu O, Pierpaoli C, Anderson AW, Rogers BP, Landman BA. Hansen CB, et al. Among authors: bayrak rg. Proc SPIE Int Soc Opt Eng. 2019 Mar;10948:109482G. doi: 10.1117/12.2512949. Proc SPIE Int Soc Opt Eng. 2019. PMID: 31602086 Free PMC article.
Harmonizing 1.5T/3T Diffusion Weighted MRI through Development of Deep Learning Stabilized Microarchitecture Estimators.
Nath V, Remedios S, Parvathaneni P, Hansen CB, Bayrak RG, Bermudez C, Blaber JA, Schilling KG, Janve VA, Gao Y, Huo Y, Lyu I, Williams O, Resnick S, Beason-Held L, Rogers BP, Stepniewska I, Anderson AW, Landman BA. Nath V, et al. Among authors: bayrak rg. Proc SPIE Int Soc Opt Eng. 2019 Feb;10949:10.1117/12.2512902. doi: 10.1117/12.2512902. Epub 2019 Mar 15. Proc SPIE Int Soc Opt Eng. 2019. PMID: 32089583 Free PMC article.
Reconstruction of respiratory variation signals from fMRI data.
Salas JA, Bayrak RG, Huo Y, Chang C. Salas JA, et al. Among authors: bayrak rg. Neuroimage. 2021 Jan 15;225:117459. doi: 10.1016/j.neuroimage.2020.117459. Epub 2020 Oct 28. Neuroimage. 2021. PMID: 33129927 Free PMC article.