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ExOrthist: a tool to infer exon orthologies at any evolutionary distance.
Márquez Y, Mantica F, Cozzuto L, Burguera D, Hermoso-Pulido A, Ponomarenko J, Roy SW, Irimia M. Márquez Y, et al. Among authors: ponomarenko j. Genome Biol. 2021 Aug 20;22(1):239. doi: 10.1186/s13059-021-02441-9. Genome Biol. 2021. PMID: 34416914 Free PMC article.
An atlas of alternative splicing profiles and functional associations reveals new regulatory programs and genes that simultaneously express multiple major isoforms.
Tapial J, Ha KCH, Sterne-Weiler T, Gohr A, Braunschweig U, Hermoso-Pulido A, Quesnel-Vallières M, Permanyer J, Sodaei R, Marquez Y, Cozzuto L, Wang X, Gómez-Velázquez M, Rayon T, Manzanares M, Ponomarenko J, Blencowe BJ, Irimia M. Tapial J, et al. Among authors: ponomarenko j. Genome Res. 2017 Oct;27(10):1759-1768. doi: 10.1101/gr.220962.117. Epub 2017 Aug 30. Genome Res. 2017. PMID: 28855263 Free PMC article.
NFAT5 Amplifies Antipathogen Responses by Enhancing Chromatin Accessibility, H3K27 Demethylation, and Transcription Factor Recruitment.
Lunazzi G, Buxadé M, Riera-Borrull M, Higuera L, Bonnin S, Huerga Encabo H, Gaggero S, Reyes-Garau D, Company C, Cozzuto L, Ponomarenko J, Aramburu J, López-Rodríguez C. Lunazzi G, et al. Among authors: ponomarenko j. J Immunol. 2021 Jun 1;206(11):2652-2667. doi: 10.4049/jimmunol.2000624. Epub 2021 May 24. J Immunol. 2021. PMID: 34031145 Free PMC article.
Citizen-science based study of the oral microbiome in Cystic fibrosis and matched controls reveals major differences in diversity and abundance of bacterial and fungal species.
Willis JR, Saus E, Iraola-Guzmán S, Cabello-Yeves E, Ksiezopolska E, Cozzuto L, Bejarano LA, Andreu-Somavilla N, Alloza-Trabado M, Blanco A, Puig-Sola A, Broglio E, Carolis C, Ponomarenko J, Hecht J, Gabaldón T. Willis JR, et al. Among authors: ponomarenko j. J Oral Microbiol. 2021 May 17;13(1):1897328. doi: 10.1080/20002297.2021.1897328. J Oral Microbiol. 2021. PMID: 34104346 Free PMC article.
Citizen-science reveals changes in the oral microbiome in Spain through age and lifestyle factors.
Willis JR, Saus E, Iraola-Guzmán S, Ksiezopolska E, Cozzuto L, Bejarano LA, Andreu-Somavilla N, Alloza-Trabado M, Blanco A, Puig-Sola A, Broglio E, Carolis C, Ponomarenko J, Hecht J, Gabaldón T. Willis JR, et al. Among authors: ponomarenko j. NPJ Biofilms Microbiomes. 2022 May 19;8(1):38. doi: 10.1038/s41522-022-00279-y. NPJ Biofilms Microbiomes. 2022. PMID: 35585074 Free PMC article.
Oral microbiome in down syndrome and its implications on oral health.
Willis JR, Iraola-Guzmán S, Saus E, Ksiezopolska E, Cozzuto L, Bejarano LA, Andreu-Somavilla N, Alloza-Trabado M, Puig-Sola A, Blanco A, Broglio E, Carolis C, Hecht J, Ponomarenko J, Gabaldón T. Willis JR, et al. Among authors: ponomarenko j. J Oral Microbiol. 2020 Dec 30;13(1):1865690. doi: 10.1080/20002297.2020.1865690. J Oral Microbiol. 2020. PMID: 33456723 Free PMC article.
76 results