Zhang J - Search Results

1

The native cistrome and sequence motif families of the maize ear.

Savadel SD, Hartwig T, Turpin ZM, Vera DL, Lung PY, Sui X, Blank M, Frommer WB, Dennis JH, Zhang J, Bass HW. Savadel SD, et al. Among authors: zhang j. PLoS Genet. 2021 Aug 12;17(8):e1009689. doi: 10.1371/journal.pgen.1009689. eCollection 2021 Aug. PLoS Genet. 2021. PMID: 34383745 Free PMC article.

2

The spring-loaded genome: nucleosome redistributions are widespread, transient, and DNA-directed.

Sexton BS, Avey D, Druliner BR, Fincher JA, Vera DL, Grau DJ, Borowsky ML, Gupta S, Girimurugan SB, Chicken E, Zhang J, Noble WS, Zhu F, Kingston RE, Dennis JH. Sexton BS, et al. Among authors: zhang j. Genome Res. 2014 Feb;24(2):251-9. doi: 10.1101/gr.160150.113. Epub 2013 Dec 5. Genome Res. 2014. PMID: 24310001 Free PMC article.

3

Differential nuclease sensitivity profiling of chromatin reveals biochemical footprints coupled to gene expression and functional DNA elements in maize.

Vera DL, Madzima TF, Labonne JD, Alam MP, Hoffman GG, Girimurugan SB, Zhang J, McGinnis KM, Dennis JH, Bass HW. Vera DL, et al. Among authors: zhang j. Plant Cell. 2014 Oct;26(10):3883-93. doi: 10.1105/tpc.114.130609. Epub 2014 Oct 31. Plant Cell. 2014. PMID: 25361955 Free PMC article.

4

Personalized chemotherapy selection for breast cancer using gene expression profiles.

Yu K, Sang QA, Lung PY, Tan W, Lively T, Sheffield C, Bou-Dargham MJ, Liu JS, Zhang J. Yu K, et al. Among authors: zhang j. Sci Rep. 2017 Mar 3;7:43294. doi: 10.1038/srep43294. Sci Rep. 2017. PMID: 28256629 Free PMC article.

5

iSeg: an efficient algorithm for segmentation of genomic and epigenomic data.

Girimurugan SB, Liu Y, Lung PY, Vera DL, Dennis JH, Bass HW, Zhang J. Girimurugan SB, et al. Among authors: zhang j. BMC Bioinformatics. 2018 Apr 11;19(1):131. doi: 10.1186/s12859-018-2140-3. BMC Bioinformatics. 2018. PMID: 29642840 Free PMC article.

6

Automatic extraction of protein-protein interactions using grammatical relationship graph.

Yu K, Lung PY, Zhao T, Zhao P, Tseng YY, Zhang J. Yu K, et al. Among authors: zhang j. BMC Med Inform Decis Mak. 2018 Jul 23;18(Suppl 2):42. doi: 10.1186/s12911-018-0628-4. BMC Med Inform Decis Mak. 2018. PMID: 30066644 Free PMC article.

7

Chromatin structure profile data from DNS-seq: Differential nuclease sensitivity mapping of four reference tissues of B73 maize (Zea mays L).

Turpin ZM, Vera DL, Savadel SD, Lung PY, Wear EE, Mickelson-Young L, Thompson WF, Hanley-Bowdoin L, Dennis JH, Zhang J, Bass HW. Turpin ZM, et al. Among authors: zhang j. Data Brief. 2018 Aug 10;20:358-363. doi: 10.1016/j.dib.2018.08.015. eCollection 2018 Oct. Data Brief. 2018. PMID: 30175199 Free PMC article.

8

Dysregulated gene expression predicts tumor aggressiveness in African-American prostate cancer patients.

Ali HEA, Lung PY, Sholl AB, Gad SA, Bustamante JJ, Ali HI, Rhim JS, Deep G, Zhang J, Abd Elmageed ZY. Ali HEA, et al. Among authors: zhang j. Sci Rep. 2018 Nov 5;8(1):16335. doi: 10.1038/s41598-018-34637-8. Sci Rep. 2018. PMID: 30397274 Free PMC article.

9

Extracting chemical-protein interactions from literature using sentence structure analysis and feature engineering.

Lung PY, He Z, Zhao T, Yu D, Zhang J. Lung PY, et al. Among authors: zhang j. Database (Oxford). 2019 Jan 1;2019:bay138. doi: 10.1093/database/bay138. Database (Oxford). 2019. PMID: 30624652 Free PMC article.

10

The regulatory landscape of early maize inflorescence development.

Parvathaneni RK, Bertolini E, Shamimuzzaman M, Vera DL, Lung PY, Rice BR, Zhang J, Brown PJ, Lipka AE, Bass HW, Eveland AL. Parvathaneni RK, et al. Among authors: zhang j. Genome Biol. 2020 Jul 6;21(1):165. doi: 10.1186/s13059-020-02070-8. Genome Biol. 2020. PMID: 32631399 Free PMC article.

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