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Towards in silico CLIP-seq: predicting protein-RNA interaction via sequence-to-signal learning.
Genome Biol. 2023 Aug 4;24(1):180. doi: 10.1186/s13059-023-03015-7.
Genome Biol. 2023.
PMID: 37542318
Free PMC article.
Positional motif analysis reveals the extent of specificity of protein-RNA interactions observed by CLIP.
Kuret K, Amalietti AG, Jones DM, Capitanchik C, Ule J.
Kuret K, et al.
Genome Biol. 2022 Sep 9;23(1):191. doi: 10.1186/s13059-022-02755-2.
Genome Biol. 2022.
PMID: 36085079
Free PMC article.
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TDP-43 condensation properties specify its RNA-binding and regulatory repertoire.
Hallegger M, Chakrabarti AM, Lee FCY, Lee BL, Amalietti AG, Odeh HM, Copley KE, Rubien JD, Portz B, Kuret K, Huppertz I, Rau F, Patani R, Fawzi NL, Shorter J, Luscombe NM, Ule J.
Hallegger M, et al. Among authors: kuret k.
Cell. 2021 Sep 2;184(18):4680-4696.e22. doi: 10.1016/j.cell.2021.07.018. Epub 2021 Aug 10.
Cell. 2021.
PMID: 34380047
Free PMC article.
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