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Founder reconstruction enables scalable and seamless pangenomic analysis.
Bioinformatics. 2021 Dec 11;37(24):4611-4619. doi: 10.1093/bioinformatics/btab516.
Bioinformatics. 2021.
PMID: 34260702
Free PMC article.
Linear time minimum segmentation enables scalable founder reconstruction.
Norri T, Cazaux B, Kosolobov D, Mäkinen V.
Norri T, et al.
Algorithms Mol Biol. 2019 May 17;14:12. doi: 10.1186/s13015-019-0147-6. eCollection 2019.
Algorithms Mol Biol. 2019.
PMID: 31131017
Free PMC article.
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Evaluating approaches to find exon chains based on long reads.
Kuosmanen A, Norri T, Mäkinen V.
Kuosmanen A, et al. Among authors: norri t.
Brief Bioinform. 2018 May 1;19(3):404-414. doi: 10.1093/bib/bbw137.
Brief Bioinform. 2018.
PMID: 28069635
Free PMC article.
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Towards pan-genome read alignment to improve variation calling.
Valenzuela D, Norri T, Välimäki N, Pitkänen E, Mäkinen V.
Valenzuela D, et al. Among authors: norri t.
BMC Genomics. 2018 May 9;19(Suppl 2):87. doi: 10.1186/s12864-018-4465-8.
BMC Genomics. 2018.
PMID: 29764365
Free PMC article.
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Tackling reference bias in genotyping by using founder sequences with PanVC 3.
Norri T, Mäkinen V.
Norri T, et al.
Bioinform Adv. 2024 Mar 4;4(1):vbae027. doi: 10.1093/bioadv/vbae027. eCollection 2024.
Bioinform Adv. 2024.
PMID: 38464975
Free PMC article.
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