Bernardi A - Search Results

1

Toward a Multipathway Perspective: pH-Dependent Kinetic Selection of Competing Pathways and the Role of the Internal Glutamate in Cl^-/H⁺ Antiporters.

Yue Z, Bernardi A, Li C, Mironenko AV, Swanson JMJ. Yue Z, et al. Among authors: bernardi a. J Phys Chem B. 2021 Jul 29;125(29):7975-7984. doi: 10.1021/acs.jpcb.1c03304. Epub 2021 Jul 14. J Phys Chem B. 2021. PMID: 34260231 Free PMC article.

2

CycFlowDec: A Python module for decomposing flow networks using simple cycles.

Bernardi A, Swanson JMJ. Bernardi A, et al. SoftwareX. 2021 Jun;14:100676. doi: 10.1016/j.softx.2021.100676. Epub 2021 Feb 24. SoftwareX. 2021. PMID: 34703873 Free PMC article.

3

Determining structure and action mechanism of LBF14 by molecular simulation.

Solbach F, Bernardi A, Bansal S, Budamagunta MS, Krep L, Leonhard K, Voss JC, Lam KS, Faller R. Solbach F, et al. Among authors: bernardi a. J Biomol Struct Dyn. 2022;40(22):11977-11988. doi: 10.1080/07391102.2021.1967783. Epub 2021 Aug 23. J Biomol Struct Dyn. 2022. PMID: 34424133

4

Structural analysis of human glycoprotein butyrylcholinesterase using atomistic molecular dynamics: The importance of glycosylation site ASN241.

Bernardi A, Kirschner KN, Faller R. Bernardi A, et al. PLoS One. 2017 Nov 30;12(11):e0187994. doi: 10.1371/journal.pone.0187994. eCollection 2017. PLoS One. 2017. PMID: 29190644 Free PMC article.

5

Confining Liquids inside Carbon Nanotubes: Accelerated Molecular Dynamics with Spliced, Soft-Core Potentials and Simulated Annealing.

Bernardi A, Meshot ER, Faller R. Bernardi A, et al. J Chem Theory Comput. 2020 Apr 14;16(4):2692-2702. doi: 10.1021/acs.jctc.0c00009. Epub 2020 Mar 25. J Chem Theory Comput. 2020. PMID: 32155064

6

Development and simulation of fully glycosylated molecular models of ACE2-Fc fusion proteins and their interaction with the SARS-CoV-2 spike protein binding domain.

Bernardi A, Huang Y, Harris B, Xiong Y, Nandi S, McDonald KA, Faller R. Bernardi A, et al. PLoS One. 2020 Aug 5;15(8):e0237295. doi: 10.1371/journal.pone.0237295. eCollection 2020. PLoS One. 2020. PMID: 32756606 Free PMC article.

7

Effects of N-Glycosylation on the Structure, Function, and Stability of a Plant-Made Fc-Fusion Anthrax Decoy Protein.

Xiong Y, Karuppanan K, Bernardi A, Li Q, Kommineni V, Dandekar AM, Lebrilla CB, Faller R, McDonald KA, Nandi S. Xiong Y, et al. Among authors: bernardi a. Front Plant Sci. 2019 Jun 28;10:768. doi: 10.3389/fpls.2019.00768. eCollection 2019. Front Plant Sci. 2019. PMID: 31316527 Free PMC article.

8

Deep learning models for atypical serotonergic cells recognition.

Corradetti D, Bernardi A, Corradetti R. Corradetti D, et al. Among authors: bernardi a. J Neurosci Methods. 2024 Jul;407:110158. doi: 10.1016/j.jneumeth.2024.110158. Epub 2024 May 3. J Neurosci Methods. 2024. PMID: 38703797 Free article.

9

Gastric signet-ring cell adenocarcinoma masquerading as sarcoidosis.

Belkaïd S, Crumbach L, de Bernardi A, Darnis S, Bouquerel M, Neuhart A, Assaad S, Amini-Adle M. Belkaïd S, et al. Among authors: de bernardi a. Lancet Oncol. 2024 Apr;25(4):e173. doi: 10.1016/S1470-2045(24)00105-0. Lancet Oncol. 2024. PMID: 38547901 No abstract available.

10

Differences in the Behavioral Parameters of Young Zebu and Composite Bulls Kept on Non-Forested or in Integrated Crop-Livestock-Forestry Systems.

Moraes MJ, Castilho EF, Balieiro JCC, Bernardi ACC, Barreto ADN, Pinho LF, Ramos GG, Azevedo GN, Zanetti LK, Garcia AR. Moraes MJ, et al. Among authors: bernardi acc. Animals (Basel). 2024 Mar 19;14(6):944. doi: 10.3390/ani14060944. Animals (Basel). 2024. PMID: 38540042 Free PMC article.

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