Xu M - Search Results

1

DECODE: a Deep-learning framework for Condensing enhancers and refining boundaries with large-scale functional assays.

Chen Z, Zhang J, Liu J, Dai Y, Lee D, Min MR, Xu M, Gerstein M. Chen Z, et al. Among authors: xu m. Bioinformatics. 2021 Jul 12;37(Suppl_1):i280-i288. doi: 10.1093/bioinformatics/btab283. Bioinformatics. 2021. PMID: 34252960 Free PMC article.

2

Deep learning-based subdivision approach for large scale macromolecules structure recovery from electron cryo tomograms.

Xu M, Chai X, Muthakana H, Liang X, Yang G, Zeev-Ben-Mordehai T, Xing EP. Xu M, et al. Bioinformatics. 2017 Jul 15;33(14):i13-i22. doi: 10.1093/bioinformatics/btx230. Bioinformatics. 2017. PMID: 28881965 Free PMC article.

3

Transcriptome and epigenome landscape of human cortical development modeled in organoids.

Amiri A, Coppola G, Scuderi S, Wu F, Roychowdhury T, Liu F, Pochareddy S, Shin Y, Safi A, Song L, Zhu Y, Sousa AMM; PsychENCODE Consortium; Gerstein M, Crawford GE, Sestan N, Abyzov A, Vaccarino FM. Amiri A, et al. Science. 2018 Dec 14;362(6420):eaat6720. doi: 10.1126/science.aat6720. Science. 2018. PMID: 30545853 Free PMC article.

4

Comprehensive functional genomic resource and integrative model for the human brain.

Wang D, Liu S, Warrell J, Won H, Shi X, Navarro FCP, Clarke D, Gu M, Emani P, Yang YT, Xu M, Gandal MJ, Lou S, Zhang J, Park JJ, Yan C, Rhie SK, Manakongtreecheep K, Zhou H, Nathan A, Peters M, Mattei E, Fitzgerald D, Brunetti T, Moore J, Jiang Y, Girdhar K, Hoffman GE, Kalayci S, Gümüş ZH, Crawford GE; PsychENCODE Consortium; Roussos P, Akbarian S, Jaffe AE, White KP, Weng Z, Sestan N, Geschwind DH, Knowles JA, Gerstein MB. Wang D, et al. Among authors: xu m. Science. 2018 Dec 14;362(6420):eaat8464. doi: 10.1126/science.aat8464. Science. 2018. PMID: 30545857 Free PMC article.

5

Building a Hybrid Physical-Statistical Classifier for Predicting the Effect of Variants Related to Protein-Drug Interactions.

Wang B, Yan C, Lou S, Emani P, Li B, Xu M, Kong X, Meyerson W, Yang YT, Lee D, Gerstein M. Wang B, et al. Among authors: xu m. Structure. 2019 Sep 3;27(9):1469-1481.e3. doi: 10.1016/j.str.2019.06.001. Epub 2019 Jul 3. Structure. 2019. PMID: 31279629 Free article.

6

Few shot domain adaptation for in situ macromolecule structural classification in cryoelectron tomograms.

Yu L, Li R, Zeng X, Wang H, Jin J, Ge Y, Jiang R, Xu M. Yu L, et al. Among authors: xu m. Bioinformatics. 2021 Apr 19;37(2):185-191. doi: 10.1093/bioinformatics/btaa671. Bioinformatics. 2021. PMID: 32722755 Free PMC article.

7

AttPNet: Attention-Based Deep Neural Network for 3D Point Set Analysis.

Yang Y, Ma Y, Zhang J, Gao X, Xu M. Yang Y, et al. Among authors: xu m. Sensors (Basel). 2020 Sep 23;20(19):5455. doi: 10.3390/s20195455. Sensors (Basel). 2020. PMID: 32977508 Free PMC article.

8

Few-shot learning for classification of novel macromolecular structures in cryo-electron tomograms.

Li R, Yu L, Zhou B, Zeng X, Wang Z, Yang X, Zhang J, Gao X, Jiang R, Xu M. Li R, et al. Among authors: xu m. PLoS Comput Biol. 2020 Nov 11;16(11):e1008227. doi: 10.1371/journal.pcbi.1008227. eCollection 2020 Nov. PLoS Comput Biol. 2020. PMID: 33175839 Free PMC article.

9

SCAN-ATAC-Sim: a scalable and efficient method for simulating single-cell ATAC-seq data from bulk-tissue experiments.

Chen Z, Zhang J, Liu J, Zhang Z, Zhu J, Lee D, Xu M, Gerstein M. Chen Z, et al. Among authors: xu m. Bioinformatics. 2021 Jul 19;37(12):1756-1758. doi: 10.1093/bioinformatics/btaa1039. Bioinformatics. 2021. PMID: 33471102 Free PMC article.

10

One-Shot Learning With Attention-Guided Segmentation in Cryo-Electron Tomography.

Zhou B, Yu H, Zeng X, Yang X, Zhang J, Xu M. Zhou B, et al. Among authors: xu m. Front Mol Biosci. 2021 Jan 12;7:613347. doi: 10.3389/fmolb.2020.613347. eCollection 2020. Front Mol Biosci. 2021. PMID: 33511158 Free PMC article.

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