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Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops.
Dillon MR, Bolyen E, Adamov A, Belk A, Borsom E, Burcham Z, Debelius JW, Deel H, Emmons A, Estaki M, Herman C, Keefe CR, Morton JT, Oliveira RRM, Sanchez A, Simard A, Vázquez-Baeza Y, Ziemski M, Miwa HE, Kerere TA, Coote C, Bonneau R, Knight R, Oliveira G, Gopalasingam P, Kaehler BD, Cope EK, Metcalf JL, Robeson Ii MS, Bokulich NA, Caporaso JG. Dillon MR, et al. Among authors: metcalf jl. PLoS Comput Biol. 2021 Jun 24;17(6):e1009056. doi: 10.1371/journal.pcbi.1009056. eCollection 2021 Jun. PLoS Comput Biol. 2021. PMID: 34166363 Free PMC article.
Defining the human microbiome.
Ursell LK, Metcalf JL, Parfrey LW, Knight R. Ursell LK, et al. Among authors: metcalf jl. Nutr Rev. 2012 Aug;70 Suppl 1(Suppl 1):S38-44. doi: 10.1111/j.1753-4887.2012.00493.x. Nutr Rev. 2012. PMID: 22861806 Free PMC article. Review.
Replenishing our defensive microbes.
Ursell LK, Van Treuren W, Metcalf JL, Pirrung M, Gewirtz A, Knight R. Ursell LK, et al. Among authors: metcalf jl. Bioessays. 2013 Sep;35(9):810-7. doi: 10.1002/bies.201300018. Epub 2013 Jul 8. Bioessays. 2013. PMID: 23836415 Free PMC article. Review.
Microbiology of death.
Metcalf JL, Carter DO, Knight R. Metcalf JL, et al. Curr Biol. 2016 Jul 11;26(13):R561-R563. doi: 10.1016/j.cub.2016.03.042. Curr Biol. 2016. PMID: 27404249 Free article.
Balance Trees Reveal Microbial Niche Differentiation.
Morton JT, Sanders J, Quinn RA, McDonald D, Gonzalez A, Vázquez-Baeza Y, Navas-Molina JA, Song SJ, Metcalf JL, Hyde ER, Lladser M, Dorrestein PC, Knight R. Morton JT, et al. Among authors: metcalf jl. mSystems. 2017 Jan 17;2(1):e00162-16. doi: 10.1128/mSystems.00162-16. eCollection 2017 Jan-Feb. mSystems. 2017. PMID: 28144630 Free PMC article.
Uncovering the Horseshoe Effect in Microbial Analyses.
Morton JT, Toran L, Edlund A, Metcalf JL, Lauber C, Knight R. Morton JT, et al. Among authors: metcalf jl. mSystems. 2017 Feb 21;2(1):e00166-16. doi: 10.1128/mSystems.00166-16. eCollection 2017 Jan-Feb. mSystems. 2017. PMID: 28251186 Free PMC article.
Microbiome Tools for Forensic Science.
Metcalf JL, Xu ZZ, Bouslimani A, Dorrestein P, Carter DO, Knight R. Metcalf JL, et al. Trends Biotechnol. 2017 Sep;35(9):814-823. doi: 10.1016/j.tibtech.2017.03.006. Epub 2017 Mar 30. Trends Biotechnol. 2017. PMID: 28366290 Review.
89 results