Edwards JR - Search Results

1

Determining subpopulation methylation profiles from bisulfite sequencing data of heterogeneous samples using DXM.

Fong J, Gardner JR, Andrews JM, Cashen AF, Payton JE, Weinberger KQ, Edwards JR. Fong J, et al. Among authors: edwards jr. Nucleic Acids Res. 2021 Sep 20;49(16):e93. doi: 10.1093/nar/gkab516. Nucleic Acids Res. 2021. PMID: 34157105 Free PMC article.

2

Persistent androgen receptor-mediated transcription in castration-resistant prostate cancer under androgen-deprived conditions.

Decker KF, Zheng D, He Y, Bowman T, Edwards JR, Jia L. Decker KF, et al. Among authors: edwards jr. Nucleic Acids Res. 2012 Nov;40(21):10765-79. doi: 10.1093/nar/gks888. Epub 2012 Sep 27. Nucleic Acids Res. 2012. PMID: 23019221 Free PMC article.

3

Discovering high-resolution patterns of differential DNA methylation that correlate with gene expression changes.

Vanderkraats ND, Hiken JF, Decker KF, Edwards JR. Vanderkraats ND, et al. Among authors: edwards jr. Nucleic Acids Res. 2013 Aug;41(14):6816-27. doi: 10.1093/nar/gkt482. Epub 2013 Jun 7. Nucleic Acids Res. 2013. PMID: 23748561 Free PMC article.

4

Modeling complex patterns of differential DNA methylation that associate with gene expression changes.

Schlosberg CE, VanderKraats ND, Edwards JR. Schlosberg CE, et al. Among authors: edwards jr. Nucleic Acids Res. 2017 May 19;45(9):5100-5111. doi: 10.1093/nar/gkx078. Nucleic Acids Res. 2017. PMID: 28168293 Free PMC article.

5

ME-Class2 reveals context dependent regulatory roles for 5-hydroxymethylcytosine.

Schlosberg CE, Wu DY, Gabel HW, Edwards JR. Schlosberg CE, et al. Among authors: edwards jr. Nucleic Acids Res. 2019 Mar 18;47(5):e28. doi: 10.1093/nar/gkz001. Nucleic Acids Res. 2019. PMID: 30649543 Free PMC article.

6

Integrated Analysis of DNA Methylation, Hydroxymethylation, and Gene Expression Data Using ME-Class2.

Singh MK, Edwards JR. Singh MK, et al. Among authors: edwards jr. Methods Mol Biol. 2021;2198:467-489. doi: 10.1007/978-1-0716-0876-0_34. Methods Mol Biol. 2021. PMID: 32822051

7

Epigenomic regulation of human T-cell leukemia virus by chromatin-insulator CTCF.

Cheng X, Joseph A, Castro V, Chen-Liaw A, Skidmore Z, Ueno T, Fujisawa JI, Rauch DA, Challen GA, Martinez MP, Green P, Griffith M, Payton JE, Edwards JR, Ratner L. Cheng X, et al. Among authors: edwards jr. PLoS Pathog. 2021 May 21;17(5):e1009577. doi: 10.1371/journal.ppat.1009577. eCollection 2021 May. PLoS Pathog. 2021. PMID: 34019588 Free PMC article.

8

DNA methylation and DNA methyltransferases.

Edwards JR, Yarychkivska O, Boulard M, Bestor TH. Edwards JR, et al. Epigenetics Chromatin. 2017 May 8;10:23. doi: 10.1186/s13072-017-0130-8. eCollection 2017. Epigenetics Chromatin. 2017. PMID: 28503201 Free PMC article. Review.

9

Chromatin and sequence features that define the fine and gross structure of genomic methylation patterns.

Edwards JR, O'Donnell AH, Rollins RA, Peckham HE, Lee C, Milekic MH, Chanrion B, Fu Y, Su T, Hibshoosh H, Gingrich JA, Haghighi F, Nutter R, Bestor TH. Edwards JR, et al. Genome Res. 2010 Jul;20(7):972-80. doi: 10.1101/gr.101535.109. Epub 2010 May 20. Genome Res. 2010. PMID: 20488932 Free PMC article.

10

DNMT gene expression and methylome in Marek's disease resistant and susceptible chickens prior to and following infection by MDV.

Tian F, Zhan F, VanderKraats ND, Hiken JF, Edwards JR, Zhang H, Zhao K, Song J. Tian F, et al. Among authors: edwards jr. Epigenetics. 2013 Apr;8(4):431-44. doi: 10.4161/epi.24361. Epub 2013 Mar 28. Epigenetics. 2013. PMID: 23538681 Free PMC article.

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