Shapiro BA - Search Results

1

Structural insights of the conserved "priming loop" of hepatitis B virus pre-genomic RNA.

LeBlanc RM, Kasprzak WK, Longhini AP, Olenginski LT, Abulwerdi F, Ginocchio S, Shields B, Nyman J, Svirydava M, Del Vecchio C, Ivanic J, Schneekloth JS Jr, Shapiro BA, Dayie TK, Le Grice SFJ. LeBlanc RM, et al. Among authors: shapiro ba. J Biomol Struct Dyn. 2022;40(20):9761-9773. doi: 10.1080/07391102.2021.1934544. Epub 2021 Jun 22. J Biomol Struct Dyn. 2022. PMID: 34155954 Free PMC article.

2

STRUCTURELAB: a heterogeneous bioinformatics system for RNA structure analysis.

Shapiro BA, Kasprzak W. Shapiro BA, et al. J Mol Graph. 1996 Aug;14(4):194-205, 222-4. doi: 10.1016/s0263-7855(96)00063-x. J Mol Graph. 1996. PMID: 9076633

3

Stem Trace: an interactive visual tool for comparative RNA structure analysis.

Kasprzak W, Shapiro B. Kasprzak W, et al. Bioinformatics. 1999 Jan;15(1):16-31. doi: 10.1093/bioinformatics/15.1.16. Bioinformatics. 1999. PMID: 10068689

4

RNA folding pathway functional intermediates: their prediction and analysis.

Shapiro BA, Bengali D, Kasprzak W, Wu JC. Shapiro BA, et al. J Mol Biol. 2001 Sep 7;312(1):27-44. doi: 10.1006/jmbi.2001.4931. J Mol Biol. 2001. PMID: 11545583

5

Molecular modeling and dynamics studies of HIV-1 kissing loop structures.

Pattabiraman N, Martinez HM, Shapiro BA. Pattabiraman N, et al. Among authors: shapiro ba. J Biomol Struct Dyn. 2002 Dec;20(3):397-412. doi: 10.1080/07391102.2002.10506858. J Biomol Struct Dyn. 2002. PMID: 12437378

6

Structural differentiation of the HIV-1 polyA signals.

Gee AH, Kasprzak W, Shapiro BA. Gee AH, et al. Among authors: shapiro ba. J Biomol Struct Dyn. 2006 Feb;23(4):417-28. doi: 10.1080/07391102.2006.10531236. J Biomol Struct Dyn. 2006. PMID: 16363877

7

Structural polymorphism of the HIV-1 leader region explored by computational methods.

Kasprzak W, Bindewald E, Shapiro BA. Kasprzak W, et al. Among authors: shapiro ba. Nucleic Acids Res. 2005 Dec 20;33(22):7151-63. doi: 10.1093/nar/gki1015. Print 2005. Nucleic Acids Res. 2005. PMID: 16371347 Free PMC article.

8

Graphical exploratory data analysis of RNA secondary structure dynamics predicted by the massively parallel genetic algorithm.

Shapiro BA, Kasprzak W, Grunewald C, Aman J. Shapiro BA, et al. J Mol Graph Model. 2006 Dec;25(4):514-31. doi: 10.1016/j.jmgm.2006.04.004. Epub 2006 Apr 28. J Mol Graph Model. 2006. PMID: 16725358

9

The role of a metastable RNA secondary structure in hepatitis delta virus genotype III RNA editing.

Linnstaedt SD, Kasprzak WK, Shapiro BA, Casey JL. Linnstaedt SD, et al. Among authors: shapiro ba. RNA. 2006 Aug;12(8):1521-33. doi: 10.1261/rna.89306. Epub 2006 Jun 21. RNA. 2006. PMID: 16790843 Free PMC article.

10

Bridging the gap in RNA structure prediction.

Shapiro BA, Yingling YG, Kasprzak W, Bindewald E. Shapiro BA, et al. Curr Opin Struct Biol. 2007 Apr;17(2):157-65. doi: 10.1016/j.sbi.2007.03.001. Epub 2007 Mar 23. Curr Opin Struct Biol. 2007. PMID: 17383172 Review.

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