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efam: an expanded, metaproteome-supported HMM profile database of viral protein families.
Zayed AA, Lücking D, Mohssen M, Cronin D, Bolduc B, Gregory AC, Hargreaves KR, Piehowski PD, White Iii RA, Huang EL, Adkins JN, Roux S, Moraru C, Sullivan MB. Zayed AA, et al. Among authors: sullivan mb. Bioinformatics. 2021 Nov 18;37(22):4202-4208. doi: 10.1093/bioinformatics/btab451. Bioinformatics. 2021. PMID: 34132786 Free PMC article.
Ocean plankton. Patterns and ecological drivers of ocean viral communities.
Brum JR, Ignacio-Espinoza JC, Roux S, Doulcier G, Acinas SG, Alberti A, Chaffron S, Cruaud C, de Vargas C, Gasol JM, Gorsky G, Gregory AC, Guidi L, Hingamp P, Iudicone D, Not F, Ogata H, Pesant S, Poulos BT, Schwenck SM, Speich S, Dimier C, Kandels-Lewis S, Picheral M, Searson S; Tara Oceans Coordinators; Bork P, Bowler C, Sunagawa S, Wincker P, Karsenti E, Sullivan MB. Brum JR, et al. Among authors: sullivan mb. Science. 2015 May 22;348(6237):1261498. doi: 10.1126/science.1261498. Science. 2015. PMID: 25999515 Free article.
Illuminating structural proteins in viral "dark matter" with metaproteomics.
Brum JR, Ignacio-Espinoza JC, Kim EH, Trubl G, Jones RM, Roux S, VerBerkmoes NC, Rich VI, Sullivan MB. Brum JR, et al. Among authors: sullivan mb. Proc Natl Acad Sci U S A. 2016 Mar 1;113(9):2436-41. doi: 10.1073/pnas.1525139113. Epub 2016 Feb 16. Proc Natl Acad Sci U S A. 2016. PMID: 26884177 Free PMC article.
Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer.
Gregory AC, Solonenko SA, Ignacio-Espinoza JC, LaButti K, Copeland A, Sudek S, Maitland A, Chittick L, Dos Santos F, Weitz JS, Worden AZ, Woyke T, Sullivan MB. Gregory AC, et al. Among authors: sullivan mb. BMC Genomics. 2016 Nov 16;17(1):930. doi: 10.1186/s12864-016-3286-x. BMC Genomics. 2016. PMID: 27852226 Free PMC article.
278 results