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Page 1
Modelling covalent linkages in CCP4.
Nicholls RA, Joosten RP, Long F, Wojdyr M, Lebedev A, Krissinel E, Catapano L, Fischer M, Emsley P, Murshudov GN. Nicholls RA, et al. Among authors: joosten rp. Acta Crystallogr D Struct Biol. 2021 Jun 1;77(Pt 6):712-726. doi: 10.1107/S2059798321001753. Epub 2021 May 19. Acta Crystallogr D Struct Biol. 2021. PMID: 34076587 Free PMC article.
A new generation of crystallographic validation tools for the protein data bank.
Read RJ, Adams PD, Arendall WB 3rd, Brunger AT, Emsley P, Joosten RP, Kleywegt GJ, Krissinel EB, Lütteke T, Otwinowski Z, Perrakis A, Richardson JS, Sheffler WH, Smith JL, Tickle IJ, Vriend G, Zwart PH. Read RJ, et al. Among authors: joosten rp. Structure. 2011 Oct 12;19(10):1395-412. doi: 10.1016/j.str.2011.08.006. Structure. 2011. PMID: 22000512 Free PMC article.
PDB_REDO: constructive validation, more than just looking for errors.
Joosten RP, Joosten K, Murshudov GN, Perrakis A. Joosten RP, et al. Among authors: joosten k. Acta Crystallogr D Biol Crystallogr. 2012 Apr;68(Pt 4):484-96. doi: 10.1107/S0907444911054515. Epub 2012 Mar 16. Acta Crystallogr D Biol Crystallogr. 2012. PMID: 22505269 Free PMC article.
Validation and correction of Zn-CysxHisy complexes.
Touw WG, van Beusekom B, Evers JM, Vriend G, Joosten RP. Touw WG, et al. Among authors: joosten rp. Acta Crystallogr D Struct Biol. 2016 Oct 1;72(Pt 10):1110-1118. doi: 10.1107/S2059798316013036. Epub 2016 Sep 15. Acta Crystallogr D Struct Biol. 2016. PMID: 27710932 Free PMC article.
Characterization and structure determination of a llama-derived nanobody targeting the J-base binding protein 1.
van Beusekom B, Heidebrecht T, Adamopoulos A, Fish A, Pardon E, Steyaert J, Joosten RP, Perrakis A. van Beusekom B, et al. Among authors: joosten rp. Acta Crystallogr F Struct Biol Commun. 2018 Nov 1;74(Pt 11):690-695. doi: 10.1107/S2053230X18010282. Epub 2018 Oct 16. Acta Crystallogr F Struct Biol Commun. 2018. PMID: 30387773 Free PMC article.
Building and rebuilding N-glycans in protein structure models.
van Beusekom B, Wezel N, Hekkelman ML, Perrakis A, Emsley P, Joosten RP. van Beusekom B, et al. Among authors: joosten rp. Acta Crystallogr D Struct Biol. 2019 Apr 1;75(Pt 4):416-425. doi: 10.1107/S2059798319003875. Epub 2019 Apr 4. Acta Crystallogr D Struct Biol. 2019. PMID: 30988258 Free PMC article.
LAHMA: structure analysis through local annotation of homology-matched amino acids.
van Beusekom B, Damaskos G, Hekkelman ML, Salgado-Polo F, Hiruma Y, Perrakis A, Joosten RP. van Beusekom B, et al. Among authors: joosten rp. Acta Crystallogr D Struct Biol. 2021 Jan 1;77(Pt 1):28-40. doi: 10.1107/S2059798320014473. Epub 2021 Jan 1. Acta Crystallogr D Struct Biol. 2021. PMID: 33404523 Free PMC article.
The missing link: covalent linkages in structural models.
Nicholls RA, Wojdyr M, Joosten RP, Catapano L, Long F, Fischer M, Emsley P, Murshudov GN. Nicholls RA, et al. Among authors: joosten rp. Acta Crystallogr D Struct Biol. 2021 Jun 1;77(Pt 6):727-745. doi: 10.1107/S2059798321003934. Epub 2021 May 19. Acta Crystallogr D Struct Biol. 2021. PMID: 34076588 Free PMC article.
66 results