Koomen JM - Search Results

1

Metabolic Changes Are Associated with Melphalan Resistance in Multiple Myeloma.

Koomen DC, Meads MB, Magaletti DM, Guingab-Cagmat JD, Oliveira PS, Fang B, Liu M, Welsh EA, Meke LE, Jiang Z, Hampton OA, Tungesvik A, De Avila G, Alugubelli RR, Nishihori T, Silva AS, Eschrich SA, Garrett TJ, Koomen JM, Shain KH. Koomen DC, et al. Among authors: koomen jm. J Proteome Res. 2021 Jun 4;20(6):3134-3149. doi: 10.1021/acs.jproteome.1c00022. Epub 2021 May 20. J Proteome Res. 2021. PMID: 34014671

2

IPEP: an in silico tool to examine proteolytic peptides for mass spectrometry.

Lu D, Liu RZ, Izumi V, Fenstermacher D, Haura EB, Koomen J, Eschrich SA. Lu D, et al. Bioinformatics. 2008 Dec 1;24(23):2801-2. doi: 10.1093/bioinformatics/btn511. Epub 2008 Oct 7. Bioinformatics. 2008. PMID: 18842605

3

Activation of the unfolded protein response contributes toward the antitumor activity of vorinostat.

Kahali S, Sarcar B, Fang B, Williams ES, Koomen JM, Tofilon PJ, Chinnaiyan P. Kahali S, et al. Among authors: koomen jm. Neoplasia. 2010 Jan;12(1):80-6. doi: 10.1593/neo.91422. Neoplasia. 2010. PMID: 20072656 Free PMC article.

4

A chemical and phosphoproteomic characterization of dasatinib action in lung cancer.

Li J, Rix U, Fang B, Bai Y, Edwards A, Colinge J, Bennett KL, Gao J, Song L, Eschrich S, Superti-Furga G, Koomen J, Haura EB. Li J, et al. Nat Chem Biol. 2010 Apr;6(4):291-9. doi: 10.1038/nchembio.332. Epub 2010 Feb 28. Nat Chem Biol. 2010. PMID: 20190765 Free PMC article.

5

Methods for investigation of targeted kinase inhibitor therapy using chemical proteomics and phosphorylation profiling.

Fang B, Haura EB, Smalley KS, Eschrich SA, Koomen JM. Fang B, et al. Among authors: koomen jm. Biochem Pharmacol. 2010 Sep 1;80(5):739-47. doi: 10.1016/j.bcp.2010.03.027. Epub 2010 Mar 31. Biochem Pharmacol. 2010. PMID: 20361944 Free PMC article. Review.

6

Quantification of beta-catenin signaling components in colon cancer cell lines, tissue sections, and microdissected tumor cells using reaction monitoring mass spectrometry.

Chen Y, Gruidl M, Remily-Wood E, Liu RZ, Eschrich S, Lloyd M, Nasir A, Bui MM, Huang E, Shibata D, Yeatman T, Koomen JM. Chen Y, et al. Among authors: koomen jm. J Proteome Res. 2010 Aug 6;9(8):4215-27. doi: 10.1021/pr1005197. J Proteome Res. 2010. PMID: 20590165 Free PMC article.

7

Characterizing tyrosine phosphorylation signaling in lung cancer using SH2 profiling.

Machida K, Eschrich S, Li J, Bai Y, Koomen J, Mayer BJ, Haura EB. Machida K, et al. PLoS One. 2010 Oct 19;5(10):e13470. doi: 10.1371/journal.pone.0013470. PLoS One. 2010. PMID: 20976048 Free PMC article.

8

Mass spectrometry mapping of epidermal growth factor receptor phosphorylation related to oncogenic mutations and tyrosine kinase inhibitor sensitivity.

Zhang G, Fang B, Liu RZ, Lin H, Kinose F, Bai Y, Oguz U, Remily-Wood ER, Li J, Altiok S, Eschrich S, Koomen J, Haura EB. Zhang G, et al. J Proteome Res. 2011 Jan 7;10(1):305-19. doi: 10.1021/pr1006203. Epub 2010 Dec 3. J Proteome Res. 2011. PMID: 21080693 Free PMC article.

9

Critical role of Shp2 in tumor growth involving regulation of c-Myc.

Ren Y, Chen Z, Chen L, Fang B, Win-Piazza H, Haura E, Koomen JM, Wu J. Ren Y, et al. Among authors: koomen jm. Genes Cancer. 2010 Oct;1(10):994-1007. doi: 10.1177/1947601910395582. Genes Cancer. 2010. PMID: 21442024 Free PMC article.

10

A database of reaction monitoring mass spectrometry assays for elucidating therapeutic response in cancer.

Remily-Wood ER, Liu RZ, Xiang Y, Chen Y, Thomas CE, Rajyaguru N, Kaufman LM, Ochoa JE, Hazlehurst L, Pinilla-Ibarz J, Lancet J, Zhang G, Haura E, Shibata D, Yeatman T, Smalley KS, Dalton WS, Huang E, Scott E, Bloom GC, Eschrich SA, Koomen JM. Remily-Wood ER, et al. Among authors: koomen jm. Proteomics Clin Appl. 2011 Aug;5(7-8):383-96. doi: 10.1002/prca.201000115. Epub 2011 Jun 8. Proteomics Clin Appl. 2011. PMID: 21656910 Free PMC article.

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