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Reconstruction of ancient microbial genomes from the human gut.
Wibowo MC, Yang Z, Borry M, Hübner A, Huang KD, Tierney BT, Zimmerman S, Barajas-Olmos F, Contreras-Cubas C, García-Ortiz H, Martínez-Hernández A, Luber JM, Kirstahler P, Blohm T, Smiley FE, Arnold R, Ballal SA, Pamp SJ, Russ J, Maixner F, Rota-Stabelli O, Segata N, Reinhard K, Orozco L, Warinner C, Snow M, LeBlanc S, Kostic AD. Wibowo MC, et al. Among authors: warinner c. Nature. 2021 Jun;594(7862):234-239. doi: 10.1038/s41586-021-03532-0. Epub 2021 May 12. Nature. 2021. PMID: 33981035 Free PMC article.
Pathogens and host immunity in the ancient human oral cavity.
Warinner C, Rodrigues JF, Vyas R, Trachsel C, Shved N, Grossmann J, Radini A, Hancock Y, Tito RY, Fiddyment S, Speller C, Hendy J, Charlton S, Luder HU, Salazar-García DC, Eppler E, Seiler R, Hansen LH, Castruita JA, Barkow-Oesterreicher S, Teoh KY, Kelstrup CD, Olsen JV, Nanni P, Kawai T, Willerslev E, von Mering C, Lewis CM Jr, Collins MJ, Gilbert MT, Rühli F, Cappellini E. Warinner C, et al. Nat Genet. 2014 Apr;46(4):336-44. doi: 10.1038/ng.2906. Epub 2014 Feb 23. Nat Genet. 2014. PMID: 24562188 Free PMC article.
Subsistence strategies in traditional societies distinguish gut microbiomes.
Obregon-Tito AJ, Tito RY, Metcalf J, Sankaranarayanan K, Clemente JC, Ursell LK, Zech Xu Z, Van Treuren W, Knight R, Gaffney PM, Spicer P, Lawson P, Marin-Reyes L, Trujillo-Villarroel O, Foster M, Guija-Poma E, Troncoso-Corzo L, Warinner C, Ozga AT, Lewis CM. Obregon-Tito AJ, et al. Among authors: warinner c. Nat Commun. 2015 Mar 25;6:6505. doi: 10.1038/ncomms7505. Nat Commun. 2015. PMID: 25807110 Free PMC article.
A guide to ancient protein studies.
Hendy J, Welker F, Demarchi B, Speller C, Warinner C, Collins MJ. Hendy J, et al. Among authors: warinner c. Nat Ecol Evol. 2018 May;2(5):791-799. doi: 10.1038/s41559-018-0510-x. Epub 2018 Mar 26. Nat Ecol Evol. 2018. PMID: 29581591 Free article. Review.
CoproID predicts the source of coprolites and paleofeces using microbiome composition and host DNA content.
Borry M, Cordova B, Perri A, Wibowo M, Prasad Honap T, Ko J, Yu J, Britton K, Girdland-Flink L, Power RC, Stuijts I, Salazar-García DC, Hofman C, Hagan R, Samdapawindé Kagoné T, Meda N, Carabin H, Jacobson D, Reinhard K, Lewis C, Kostic A, Jeong C, Herbig A, Hübner A, Warinner C. Borry M, et al. Among authors: warinner c. PeerJ. 2020 Apr 17;8:e9001. doi: 10.7717/peerj.9001. eCollection 2020. PeerJ. 2020. PMID: 32337106 Free PMC article.
Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir.
Fellows Yates JA, Andrades Valtueña A, Vågene ÅJ, Cribdon B, Velsko IM, Borry M, Bravo-Lopez MJ, Fernandez-Guerra A, Green EJ, Ramachandran SL, Heintzman PD, Spyrou MA, Hübner A, Gancz AS, Hider J, Allshouse AF, Zaro V, Warinner C. Fellows Yates JA, et al. Among authors: warinner c. Sci Data. 2021 Jan 26;8(1):31. doi: 10.1038/s41597-021-00816-y. Sci Data. 2021. PMID: 33500403 Free PMC article.
86 results