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Genomics of Environmental Salmonella: Engaging Students in the Microbiology and Bioinformatics of Foodborne Pathogens.
Front Microbiol. 2021 Apr 22;12:592422. doi: 10.3389/fmicb.2021.592422. eCollection 2021.
Front Microbiol. 2021.
PMID: 33967968
Free PMC article.
Genome Sequence of a Salmonella enterica subsp. enterica Serovar Corvallis Strain Isolated from Human Blood.
McCutchen EL, Galac M, Kapsak C, Hinrichs SH, Iwen PC, Abdalhamid B.
McCutchen EL, et al.
Microbiol Resour Announc. 2019 Oct 31;8(44):e01025-19. doi: 10.1128/MRA.01025-19.
Microbiol Resour Announc. 2019.
PMID: 31672744
Free PMC article.
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Fourteen mcr-1-Positive Salmonella enterica Isolates Recovered from Travelers Returning to the United States from the Dominican Republic.
Webb HE, Kim JY, Tagg KA, Kapsak CJ, Tobolowsky F, Birhane MG, Francois Watkins L, Folster JP.
Webb HE, et al. Among authors: kapsak cj.
Microbiol Resour Announc. 2022 May 19;11(5):e0011822. doi: 10.1128/mra.00118-22. Epub 2022 Apr 13.
Microbiol Resour Announc. 2022.
PMID: 35416692
Free PMC article.
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SneakerNet: A modular quality assurance and quality check workflow for primary genomic and metagenomic read data.
Griswold T, Kapsak C, Chen JC, den Bakker HC, Williams G, Kelley A, Vidyaprakash E, Katz LS.
Griswold T, et al.
J Open Source Softw. 2021 Apr 16;6(60):10.21105/joss.02334. doi: 10.21105/joss.02334.
J Open Source Softw. 2021.
PMID: 35360664
Free PMC article.
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Accelerating bioinformatics implementation in public health.
Libuit KG, Doughty EL, Otieno JR, Ambrosio F, Kapsak CJ, Smith EA, Wright SM, Scribner MR, Petit Iii RA, Mendes CI, Huergo M, Legacki G, Loreth C, Park DJ, Sevinsky JR.
Libuit KG, et al. Among authors: kapsak cj.
Microb Genom. 2023 Jul;9(7):mgen001051. doi: 10.1099/mgen.0.001051.
Microb Genom. 2023.
PMID: 37428142
Free PMC article.
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Development of an amplicon-based sequencing approach in response to the global emergence of mpox.
Chen NFG, Chaguza C, Gagne L, Doucette M, Smole S, Buzby E, Hall J, Ash S, Harrington R, Cofsky S, Clancy S, Kapsak CJ, Sevinsky J, Libuit K, Park DJ, Hemarajata P, Garrigues JM, Green NM, Sierra-Patev S, Carpenter-Azevedo K, Huard RC, Pearson C, Incekara K, Nishimura C, Huang JP, Gagnon E, Reever E, Razeq J, Muyombwe A, Borges V, Ferreira R, Sobral D, Duarte S, Santos D, Vieira L, Gomes JP, Aquino C, Savino IM, Felton K, Bajwa M, Hayward N, Miller H, Naumann A, Allman R, Greer N, Fall A, Mostafa HH, McHugh MP, Maloney DM, Dewar R, Kenicer J, Parker A, Mathers K, Wild J, Cotton S, Templeton KE, Churchwell G, Lee PA, Pedrosa M, McGruder B, Schmedes S, Plumb MR, Wang X, Barcellos RB, Godinho FMS, Salvato RS, Ceniseros A, Breban MI, Grubaugh ND, Gallagher GR, Vogels CBF.
Chen NFG, et al. Among authors: kapsak cj.
PLoS Biol. 2023 Jun 13;21(6):e3002151. doi: 10.1371/journal.pbio.3002151. eCollection 2023 Jun.
PLoS Biol. 2023.
PMID: 37310918
Free PMC article.
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Pathogen genomics in public health laboratories: successes, challenges, and lessons learned from California's SARS-CoV-2 Whole-Genome Sequencing Initiative, California COVIDNet.
Smith EA, Libuit KG, Kapsak CJ, Scribner MR, Wright SM, Bell J, Morales C, Crumpler M, Messenger S, Hacker JK, Ledin K, Glaser C, Jacobson K, Sevinsky JR, Wadford DA.
Smith EA, et al. Among authors: kapsak cj.
Microb Genom. 2023 Jun;9(6):mgen001027. doi: 10.1099/mgen.0.001027.
Microb Genom. 2023.
PMID: 37267020
Free PMC article.
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Development of an amplicon-based sequencing approach in response to the global emergence of human monkeypox virus.
Chen NFG, Chaguza C, Gagne L, Doucette M, Smole S, Buzby E, Hall J, Ash S, Harrington R, Cofsky S, Clancy S, Kapsak CJ, Sevinsky J, Libuit K, Park DJ, Hemarajata P, Garrigues JM, Green NM, Sierra-Patev S, Carpenter-Azevedo K, Huard RC, Pearson C, Incekara K, Nishimura C, Huang JP, Gagnon E, Reever E, Razeq J, Muyombwe A, Borges V, Ferreira R, Sobral D, Duarte S, Santos D, Vieira L, Gomes JP, Aquino C, Savino IM, Felton K, Bajwa M, Hayward N, Miller H, Naumann A, Allman R, Greer N, Fall A, Mostafa HH, McHugh MP, Maloney DM, Dewar R, Kenicer J, Parker A, Mathers K, Wild J, Cotton S, Templeton KE, Churchwell G, Lee PA, Pedrosa M, McGruder B, Schmedes S, Plumb MR, Wang X, Barcellos RB, Godinho FMS, Salvato RS, Ceniseros A, Breban MI, Grubaugh ND, Gallagher GR, Vogels CBF.
Chen NFG, et al. Among authors: kapsak cj.
medRxiv [Preprint]. 2023 Jan 13:2022.10.14.22280783. doi: 10.1101/2022.10.14.22280783.
medRxiv. 2023.
PMID: 36299420
Free PMC article.
Updated.
Preprint.
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