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NLRP1 restricts butyrate producing commensals to exacerbate inflammatory bowel disease.
Tye H, Yu CH, Simms LA, de Zoete MR, Kim ML, Zakrzewski M, Penington JS, Harapas CR, Souza-Fonseca-Guimaraes F, Wockner LF, Preaudet A, Mielke LA, Wilcox SA, Ogura Y, Corr SC, Kanojia K, Kouremenos KA, De Souza DP, McConville MJ, Flavell RA, Gerlic M, Kile BT, Papenfuss AT, Putoczki TL, Radford-Smith GL, Masters SL. Tye H, et al. Among authors: papenfuss at. Nat Commun. 2018 Sep 13;9(1):3728. doi: 10.1038/s41467-018-06125-0. Nat Commun. 2018. PMID: 30214011 Free PMC article.
High-quality nuclear genome for Sarcoptes scabiei-A critical resource for a neglected parasite.
Korhonen PK, Gasser RB, Ma G, Wang T, Stroehlein AJ, Young ND, Ang CS, Fernando DD, Lu HC, Taylor S, Reynolds SL, Mofiz E, Najaraj SH, Gowda H, Madugundu A, Renuse S, Holt D, Pandey A, Papenfuss AT, Fischer K. Korhonen PK, et al. Among authors: papenfuss at. PLoS Negl Trop Dis. 2020 Oct 1;14(10):e0008720. doi: 10.1371/journal.pntd.0008720. eCollection 2020 Oct. PLoS Negl Trop Dis. 2020. PMID: 33001992 Free PMC article.
Molecular diagnosis of scabies using a novel probe-based polymerase chain reaction assay targeting high-copy number repetitive sequences in the Sarcoptes scabiei genome.
Chng L, Holt DC, Field M, Francis JR, Tilakaratne D, Dekkers MH, Robinson G, Mounsey K, Pavlos R, Bowen AC, Fischer K, Papenfuss AT, Gasser RB, Korhonen PK, Currie BJ, McCarthy JS, Pasay C. Chng L, et al. Among authors: papenfuss at. PLoS Negl Trop Dis. 2021 Feb 24;15(2):e0009149. doi: 10.1371/journal.pntd.0009149. eCollection 2021 Feb. PLoS Negl Trop Dis. 2021. PMID: 33626043 Free PMC article.
Type 1 diabetes in pregnancy is associated with distinct changes in the composition and function of the gut microbiome.
Roth-Schulze AJ, Penno MAS, Ngui KM, Oakey H, Bandala-Sanchez E, Smith AD, Allnutt TR, Thomson RL, Vuillermin PJ, Craig ME, Rawlinson WD, Davis EA, Harris M, Soldatos G, Colman PG, Wentworth JM, Haynes A, Barry SC, Sinnott RO, Morahan G, Bediaga NG, Smyth GK, Papenfuss AT, Couper JJ, Harrison LC; ENDIA Study Group. Roth-Schulze AJ, et al. Among authors: papenfuss at. Microbiome. 2021 Aug 6;9(1):167. doi: 10.1186/s40168-021-01104-y. Microbiome. 2021. PMID: 34362459 Free PMC article.
sccomp: Robust differential composition and variability analysis for single-cell data.
Mangiola S, Roth-Schulze AJ, Trussart M, Zozaya-Valdés E, Ma M, Gao Z, Rubin AF, Speed TP, Shim H, Papenfuss AT. Mangiola S, et al. Among authors: papenfuss at. Proc Natl Acad Sci U S A. 2023 Aug 15;120(33):e2203828120. doi: 10.1073/pnas.2203828120. Epub 2023 Aug 7. Proc Natl Acad Sci U S A. 2023. PMID: 37549298 Free PMC article.
188 results